View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0359_low_5 (Length: 459)
Name: NF0359_low_5
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 11 - 430
Target Start/End: Original strand, 32345872 - 32346291
Alignment:
| Q |
11 |
cagagaagcacatttcaggggttgaagaaggtatggaacgacttgtgggattcctaaaagaccaagggtaattgaaggcaagaagatcttcaagaggaca |
110 |
Q |
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| T |
32345872 |
cagagaagcacatttcaggagttgaagaaggtatgaaacgacttgtgggattcctaaaagaccaagggtaattgaagacaagaagatcttcaagaggaca |
32345971 |
T |
|
| Q |
111 |
taaattaatcaatccagaggttgaagaggtaatggtgataagttatggagctacttaaaaggctcagtgtagttggaggcaagtattcaagaaggcaaaa |
210 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32345972 |
taaattaatcaatccagaggttgaagaggttatggtgataagttatggagctacttaaaaggctcagtgtagttggaggcaagtattcaagaaggcaaaa |
32346071 |
T |
|
| Q |
211 |
gatgtttcgaggttcaatgaggtaaaggtggaacaacaaggctgacgtagacatcctaaagtatacattttatttttgtgttatcttaagagaaataaac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32346072 |
gatgtttcgaggttcaatgaggtaaaggtggaacaacaaggctgacgtaaacatcctaaagtatacattttatttttgtgttatcttaagagaaataaac |
32346171 |
T |
|
| Q |
311 |
gaaattatggtaccactgtaagaaccaagttgattaagaaacaatacctcgcaattgatgttttgattctaacaaagtaaaggaacaatttatctatgaa |
410 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
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| T |
32346172 |
gaaattatggtaccactgtaagaatcaagttggttaagaaacaatacctcgcaattgatgttttgattctaacaaagtaaaggaacaaattgtctataaa |
32346271 |
T |
|
| Q |
411 |
atgtgtgttcaagtgcgtaa |
430 |
Q |
| |
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| T |
32346272 |
atgtgtgttcaagtgcgtaa |
32346291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 10456234 - 10456153
Alignment:
| Q |
31 |
gttgaagaaggtatggaacgacttgtgggatt-cctaaaagaccaagggtaattgaaggcaagaagatcttcaagaggacat |
111 |
Q |
| |
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||||||||| |||||| || |||||||||||| ||||||||||||||||| |||| | | ||| |||| ||||||| ||||| |
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| T |
10456234 |
gttgaagaatgtatggcacaacttgtgggattacctaaaagaccaagggtgattggatgtaaggagatattcaagaagacat |
10456153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 37048344 - 37048262
Alignment:
| Q |
28 |
ggggttgaagaaggtatggaacgacttgtgggatt-cctaaaagaccaagggtaattgaaggcaagaagatcttcaagaggac |
109 |
Q |
| |
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||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
37048344 |
ggggttgaagaaggtatggaatggcttatgggattacctaaaagaccaagggtaattggaggcaagagaatcttcaagaggac |
37048262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 29797170 - 29797096
Alignment:
| Q |
32 |
ttgaagaaggtatggaacgacttgtgggatt-cctaaaagaccaagggtaattgaaggcaagaagatcttcaaga |
105 |
Q |
| |
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|||| ||| |||||||| ||||||||||||| ||||||||||||| |||||||| | ||||| | |||||||||| |
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| T |
29797170 |
ttgaggaatgtatggaatgacttgtgggattacctaaaagaccaatggtaattgcatgcaaggaaatcttcaaga |
29797096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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