View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0359_low_8 (Length: 378)
Name: NF0359_low_8
Description: NF0359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0359_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 44 - 366
Target Start/End: Original strand, 41957873 - 41958201
Alignment:
| Q |
44 |
gatcagatggcggagagtgtggaggtgctgaggcagcttcgcgtgctgattttgtaagacaagaaaagtgaaagtcaaaatctatacctagagctagagg |
143 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41957873 |
gatcagatggcggag--tgtggaggtgctgaggcagcttcgcgtgctgattttgtaagacaagaaaagtgaaagtcaaaatctatacctagagctagagg |
41957970 |
T |
|
| Q |
144 |
tgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttgtcggataacggatttgtcggttgaaactcacaaatgca-- |
241 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41957971 |
tgttcatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttgtcacataacggatttgtcggttgaaactcacaaatgcaac |
41958070 |
T |
|
| Q |
242 |
------acatctcatgcagtattactttcggttcgctttgcgctaatgttctaccnnnnnnngtcttgggattttggcatctggttatattgatgggttg |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| |
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| T |
41958071 |
ccgttgacatctcatgcagtattactttcggttcgctttgcgctaatgttctacctttctctgtcttcggattttggcatcgggttatattgatgggttg |
41958170 |
T |
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| Q |
336 |
ggtttttggataggttaaagtgtctgctctg |
366 |
Q |
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| |||||||| ||||||| |||||||||||| |
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| T |
41958171 |
gatttttggacaggttaaggtgtctgctctg |
41958201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 44 - 267
Target Start/End: Original strand, 5598943 - 5599164
Alignment:
| Q |
44 |
gatcagatggcggagagtgtggaggtgctgaggcagcttcgcgtgctgattttgtaagacaagaaaagtgaaagtcaaaatctatacctagagctagagg |
143 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5598943 |
gatcagatggcggagagtgtcgaggtgctgaggcagcttcgcgtgctgattttgtaagacaagaaaagtgaaagtcaaaatctatacctagagctagagg |
5599042 |
T |
|
| Q |
144 |
tgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttgtcggataacggatttgtcggttgaaactcacaaatgca-- |
241 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5599043 |
tgttcatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttgtc----------tttgtcggttgaaactcacaaatgcaac |
5599132 |
T |
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| Q |
242 |
------acatctcatgcagtattactttcggt |
267 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5599133 |
cagttgacatctcatgcagtattactttcggt |
5599164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 5597558 - 5597488
Alignment:
| Q |
135 |
agctagaggtgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttgtc |
205 |
Q |
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||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||| |||||||| |
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| T |
5597558 |
agctagaggtgttcatgtgtacgggtcaaatatgaacacagttgcacaaacgacccaaaccgacatttgtc |
5597488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 44 - 267
Target Start/End: Original strand, 25548864 - 25549085
Alignment:
| Q |
44 |
gatcagatggcggagagtgtggaggtgctgaggcagcttcgcgtgctgattttgtaagacaagaaaagtgaaagtcaaaatctatacctagagctagagg |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25548864 |
gatcagatggcggagagtgtggaggtgctgaggcagcttcgcgtgctgattttgtaagacaagaaaagtgaaagtcaaaatctatacctagagctagagg |
25548963 |
T |
|
| Q |
144 |
tgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttgtcggataacggatttgtcggttgaaactcacaaatgca-- |
241 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
25548964 |
tgttcatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaatcggcatttgtc----------tttgtcggttgaaactcacaaatgcaac |
25549053 |
T |
|
| Q |
242 |
------acatctcatgcagtattactttcggt |
267 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
25549054 |
ccgttgacatctcatgcagtattactttcggt |
25549085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 44 - 243
Target Start/End: Original strand, 40637186 - 40637375
Alignment:
| Q |
44 |
gatcagatggcggagagtgtggaggtgctgaggcagcttcgcgtgctgattttgtaagacaagaaaagtgaaagtcaaaatctatacctagagctagagg |
143 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40637186 |
gatcagatggcggagagtgtggaggtgctgaggcagcttcgcgtgctgattttgtaagacaagaaaagtgaaagtcaaaatttatacctagagctagagg |
40637285 |
T |
|
| Q |
144 |
tgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttgtcggataacggatttgtcggttgaaactcacaaatgcaac |
243 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
40637286 |
tgttcatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccgtcatttgtc----------tttgtcggttgaaactcacaaatgcaac |
40637375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 40635808 - 40635738
Alignment:
| Q |
135 |
agctagaggtgtttatgtgtacgggtcaactgtgaacccagttgcacaaacgacccaaaccggcatttgtc |
205 |
Q |
| |
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||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||| |||||||| |
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| T |
40635808 |
agctagaggtgttcatgtgtacgggtcaaatatgaacacagttgcacaaacgacccaaaccgacatttgtc |
40635738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 1799048 - 1799112
Alignment:
| Q |
298 |
gtcttgggattttggcatctggttatattgatgggttgggtttttggataggttaaagtgtctgctc |
364 |
Q |
| |
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||||| ||||||||||||| |||||| || ||||| | ||||||||||||||||| |||||||||| |
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| T |
1799048 |
gtctttggattttggcatcgggttat--tggtgggtcgagtttttggataggttaaggtgtctgctc |
1799112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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