View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0360_low_12 (Length: 332)
Name: NF0360_low_12
Description: NF0360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0360_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 26737394 - 26737572
Alignment:
| Q |
73 |
agataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgtagcttcttttaattcagaatagctgaattttctt |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26737394 |
agataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgtagctttttttaattcagaatagctgaattttcta |
26737493 |
T |
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| Q |
173 |
aacccggttgctgatgctataacatacccatgattatcaacactagattgcttcctattcttgaataagatacacccta |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26737494 |
aacccggttgctgatgctataacatacccatgattatcaacactagattgcttcctattcttgaataagatacacccta |
26737572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 26714158 - 26714336
Alignment:
| Q |
73 |
agataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgtagcttcttttaattcagaatagctgaattttctt |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26714158 |
agataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgtagcttcttttaattcagaatagctgaattttcta |
26714257 |
T |
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| Q |
173 |
aacccggttgctgatgctataacatacccatgattatcaacactagattgcttcctattcttgaataagatacacccta |
251 |
Q |
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| T |
26714258 |
aacccggttgctgatgctataacatatccatgattatcaacactagattgtttgctattcttgaataagatacacccta |
26714336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 26751336 - 26751448
Alignment:
| Q |
73 |
agataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgtagcttcttttaattcagaatagctgaattttctt |
172 |
Q |
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|||||||| ||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||| ||| |||||||| || |||||||| || |
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| T |
26751336 |
agataaaacacccttatacacagttcctccagcacctcttccgatctcttgactaaaaccttttgtagcttgtttcaattcagagtaactgaatttccta |
26751435 |
T |
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| Q |
173 |
aacccggttgctg |
185 |
Q |
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||||| ||||||| |
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| T |
26751436 |
aaccctgttgctg |
26751448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 26699006 - 26699167
Alignment:
| Q |
73 |
agataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgtagcttcttttaattcagaatagctgaattttctt |
172 |
Q |
| |
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|||||||| ||||||||| || |||||||||||||| ||||| ||||||| |||||||||||||||||||| |||| |||||| || |||||||| || |
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| T |
26699006 |
agataaaacacctttatatacagttcctccagctccccttccgatctcttcgctaaaaccttttgtagcttgatttatttcagagtaactgaatttccta |
26699105 |
T |
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| Q |
173 |
aacccggttgctgatgctataacatacccatgattatcaacactagattgcttcctattctt |
234 |
Q |
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| T |
26699106 |
aaccctgtaacttcctctagatcattcccatgaataacaacaatagattgcttcctattctt |
26699167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 26734169 - 26734330
Alignment:
| Q |
73 |
agataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgtagcttcttttaattcagaatagctgaattttctt |
172 |
Q |
| |
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|||||||| ||||||||| || |||||||||||||| ||||| ||||||| |||||||||||||||||||| |||| |||||| || |||||||| || |
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| T |
26734169 |
agataaaacacctttatatacagttcctccagctccccttccgatctcttcgctaaaaccttttgtagcttgatttatttcagagtaactgaatttccta |
26734268 |
T |
|
| Q |
173 |
aacccggttgctgatgctataacatacccatgattatcaacactagattgcttcctattctt |
234 |
Q |
| |
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||||| || || ||| | ||| ||||||| || ||||| ||||||||||||||||||| |
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| T |
26734269 |
aaccctgtaacttcctctagatcattcccatgaataacaacaatagattgcttcctattctt |
26734330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 47212592 - 47212667
Alignment:
| Q |
96 |
ttcctccagctcctcttccaatctcttggctaaaaccttttgtagcttcttttaattcagaatagctgaattttct |
171 |
Q |
| |
|
||||||| || ||| ||||||||||||| ||||||| ||| ||||||| ||| ||||||||||| ||||||||||| |
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| T |
47212592 |
ttcctcctgcgccttttccaatctcttgactaaaacttttggtagcttttttcaattcagaataactgaattttct |
47212667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 26675794 - 26675888
Alignment:
| Q |
73 |
agataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgtagcttcttttaattcagaatagctgaatt |
167 |
Q |
| |
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|||||| | ||||||||| || ||||||||||| || ||||||||||||| || ||||||||||| |||| ||| |||||||| || ||||||| |
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| T |
26675794 |
agataataaacctttatatacagttcctccagcaccctttccaatctcttgactgaaaccttttgttgcttgtttcaattcagagtaactgaatt |
26675888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 26731598 - 26731533
Alignment:
| Q |
73 |
agataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgt |
138 |
Q |
| |
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|||||| | ||| |||||||| ||||||||||| || |||||||||||||| ||||||| |||||| |
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|
| T |
26731598 |
agataataaacccttatacacagttcctccagcaccacttccaatctcttgactaaaacattttgt |
26731533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 26694448 - 26694372
Alignment:
| Q |
73 |
agataaaatacctttatacacggttcctccagctcctcttccaatctcttggctaaaaccttttgtagcttctttta |
149 |
Q |
| |
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|||||| | ||| |||||||| ||||||||||| || ||||||||||||| ||||||| |||||| |||| ||||| |
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| T |
26694448 |
agataataaacccttatacacagttcctccagcaccctttccaatctcttgactaaaacattttgttgcttgtttta |
26694372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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