View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0360_low_20 (Length: 303)
Name: NF0360_low_20
Description: NF0360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0360_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 11119686 - 11119541
Alignment:
| Q |
80 |
gaagtgcgatgttgaattgtatattgaacctaagctgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtg |
179 |
Q |
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| T |
11119686 |
gaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattttatcggggaacgaaagggaaagggtgtagtg |
11119587 |
T |
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| Q |
180 |
gcggatgaagttgaaggcaatgttggtgaagcagacagtgatgatg |
225 |
Q |
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| T |
11119586 |
gcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatg |
11119541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 12206172 - 12206050
Alignment:
| Q |
103 |
ttgaacctaagctgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgt |
202 |
Q |
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| T |
12206172 |
ttgaacctaaggtgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaatgt |
12206073 |
T |
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| Q |
203 |
tggtgaagcagacagtgatgatg |
225 |
Q |
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| T |
12206072 |
tggtgaagcagacagtgatgatg |
12206050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 81 - 216
Target Start/End: Complemental strand, 32741389 - 32741254
Alignment:
| Q |
81 |
aagtgcgatgttgaattgtatattgaacctaagctgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtgg |
180 |
Q |
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| T |
32741389 |
aagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgttattggggaacaaaagggaaagggtgtagtgg |
32741290 |
T |
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| Q |
181 |
cggatgaagttgaaggcaatgttggtgaagcagaca |
216 |
Q |
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| T |
32741289 |
cggatgaaattgaaggcgatgttggtgaagtagaca |
32741254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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