View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0360_low_21 (Length: 301)
Name: NF0360_low_21
Description: NF0360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0360_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 25046210 - 25046387
Alignment:
| Q |
56 |
ttcttggctatacaagtgtggtgcaccattggatacaattccatcaaagccatgtggtgtaaagggttttgtagctttcttctgacgtgactcgaaatct |
155 |
Q |
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| T |
25046210 |
ttcttggctatacaagtgtggagcacctttggatacaattccatcaaagccatgtggtgtaaaaggttttgtagctttcttctgacgtgactcgaaatct |
25046309 |
T |
|
| Q |
156 |
gaaatgttactcttcaattcccttagtagtttcatgtttctcatgataacgatgaatatttgattattgttacagagt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25046310 |
gaaatgttactcttcaattcccttagtagtttcatgtttctcatgataacgatgaatatttgattattgttacagagt |
25046387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 25050605 - 25050782
Alignment:
| Q |
56 |
ttcttggctatacaagtgtggtgcaccattggatacaattccatcaaagccatgtggtgtaaagggttttgtagctttcttctgacgtgactcgaaatct |
155 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||| |
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| T |
25050605 |
ttcttggctatacaagtatggtgcaccattggatacaattccatcaaagccatgcggtgcaaaaggttttgtagctttcttctgacgtgacttgaaatct |
25050704 |
T |
|
| Q |
156 |
gaaatgttactcttcaattcccttagtagtttcatgtttctcatgataacgatgaatatttgattattgttacagagt |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
25050705 |
gaaatgttactcttcaattcccttagtagtttcatgtttctcatgatgacgatgaatatttgattattgctacagagt |
25050782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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