View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0360_low_22 (Length: 296)

Name: NF0360_low_22
Description: NF0360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0360_low_22
NF0360_low_22
[»] chr8 (2 HSPs)
chr8 (64-286)||(4194320-4194541)
chr8 (65-93)||(22614346-22614374)
[»] chr5 (1 HSPs)
chr5 (64-286)||(12182875-12183097)
[»] chr1 (3 HSPs)
chr1 (64-286)||(37859470-37859692)
chr1 (109-228)||(52054955-52055074)
chr1 (65-195)||(25624780-25624910)
[»] chr4 (2 HSPs)
chr4 (122-228)||(48008385-48008491)
chr4 (165-228)||(8345098-8345161)
[»] chr2 (2 HSPs)
chr2 (109-231)||(32446815-32446937)
chr2 (156-209)||(18033842-18033895)
[»] scaffold0009 (1 HSPs)
scaffold0009 (65-195)||(90916-91046)
[»] chr3 (1 HSPs)
chr3 (65-93)||(42731098-42731126)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 64 - 286
Target Start/End: Complemental strand, 4194541 - 4194320
Alignment:
Q  64 tcatcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggat 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4194541 tcatcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatt-cgtgatcgaaataatccggat 4194443  T
Q  164 catgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacggtttgcatcttttctctccaccatcggttttgtca 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4194442 catgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacggtttgcatcttttctctccaccatcggttttgtca 4194343  T
Q  264 atagcaagaccgaccactctctg 286  Q
    |||||||||||||||||||||||    
T  4194342 atagcaagaccgaccactctctg 4194320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 22614346 - 22614374
Alignment:
Q  65 catcaacttgatgtaaagaatgcttttct 93  Q
    |||||||||||||||||||||||||||||    
T  22614346 catcaacttgatgtaaagaatgcttttct 22614374  T

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Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 64 - 286
Target Start/End: Complemental strand, 12183097 - 12182875
Alignment:
Q  64 tcatcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggat 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12183097 tcatcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggat 12182998  T
Q  164 catgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacggtttgcatcttttctctccaccatcggttttgtca 263  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  12182997 catgtctgtcttctaaagaaatcactatatggccttaaacaagccccaagagcatggtaccaacagtttgcatcttttctctccaccatcggttttctca 12182898  T
Q  264 atagcaagaccgaccactctctg 286  Q
    |||||||||||||||||||||||    
T  12182897 atagcaagaccgaccactctctg 12182875  T

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Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 64 - 286
Target Start/End: Original strand, 37859470 - 37859692
Alignment:
Q  64 tcatcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggat 163  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37859470 tcatcaacttgatgtaaagaatgcttttctccatgggcacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggat 37859569  T
Q  164 catgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacggtttgcatcttttctctccaccatcggttttgtca 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  37859570 catgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacggtttgcatcttttctctccaccatcggctttgtta 37859669  T
Q  264 atagcaagaccgaccactctctg 286  Q
    |||||||||| ||||||||||||    
T  37859670 atagcaagactgaccactctctg 37859692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 52055074 - 52054955
Alignment:
Q  109 tgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggatcatgtctgtcttctaaagaaatctctatatggccttaaacaagcc 208  Q
    |||||| || || |||||||| |||| ||| ||||||||||   |  |||| ||| |||||||| | ||||| || || |||||||||||||||||||||    
T  52055074 tgaaactgtttatatgcatcaacctcttggctttcgtgatcctcaccatcctgattatgtctgtttactaaataagtcactatatggccttaaacaagcc 52054975  T
Q  209 ccaagagcatggtaccaacg 228  Q
    ||  | ||||||||||||||    
T  52054974 cctcgtgcatggtaccaacg 52054955  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 195
Target Start/End: Complemental strand, 25624910 - 25624780
Alignment:
Q  65 catcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggatc 164  Q
    |||||||| ||||| || ||||||||| | |||||| | |||   |||||||| || ||||| ||||||||||||||  |||||| | |  |||| || |    
T  25624910 catcaactagatgtcaaaaatgcttttttgcatggaaatcttgacgaaaccgtgtatatgcaccagcctcctggattctgtgatccacaatatcctgagc 25624811  T
Q  165 atgtctgtcttctaaagaaatctctatatgg 195  Q
    |||| ||||| || ||||||||||| |||||    
T  25624810 atgtttgtctcctcaagaaatctctctatgg 25624780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 48008491 - 48008385
Alignment:
Q  122 atgcatcagcctcctggatttcgtgatcgaaataatccggatcatgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggt 221  Q
    |||||||| ||||| ||||||||||||    |  |||||||| |||||||||| |||||||| || ||||| |||||||||||||||||  | |||||||    
T  48008491 atgcatcaacctcccggatttcgtgatactcaccatccggattatgtctgtctgctaaagaagtcactataaggccttaaacaagcccctcgtgcatggt 48008392  T
Q  222 accaacg 228  Q
    |||||||    
T  48008391 accaacg 48008385  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 8345098 - 8345161
Alignment:
Q  165 atgtctgtcttctaaagaaatctctatatggccttaaacaagccccaagagcatggtaccaacg 228  Q
    |||||||||| |||||||| || ||||||| |||||||||||||||  | | ||||||||||||    
T  8345098 atgtctgtctactaaagaagtcgctatatgaccttaaacaagcccctcgtgtatggtaccaacg 8345161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 32446815 - 32446937
Alignment:
Q  109 tgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggatcatgtctgtcttctaaagaaatctctatatggccttaaacaagcc 208  Q
    |||||| || || |||||||| ||||| || ||||||||||   |  |||| ||| |||||||||| |||||||| |  |||||||||||||||||||||    
T  32446815 tgaaactgtttatatgcatcaacctcccggctttcgtgatcctcaccatcctgattatgtctgtctactaaagaagtaactatatggccttaaacaagcc 32446914  T
Q  209 ccaagagcatggtaccaacggtt 231  Q
    ||  | |||||||||||||||||    
T  32446915 cctcgtgcatggtaccaacggtt 32446937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 18033842 - 18033895
Alignment:
Q  156 atccggatcatgtctgtcttctaaagaaatctctatatggccttaaacaagccc 209  Q
    |||| ||| |||||||||| |||||||| || ||||||||||||||||||||||    
T  18033842 atcctgattatgtctgtctactaaagaagtcactatatggccttaaacaagccc 18033895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 195
Target Start/End: Original strand, 90916 - 91046
Alignment:
Q  65 catcaacttgatgtaaagaatgcttttctccatggacacctttctgaaaccgtctacatgcatcagcctcctggatttcgtgatcgaaataatccggatc 164  Q
    |||||||| ||||| || ||||||||| | |||||| | |||   |||||||| || ||||| ||||||||||||||  |||||| | |  |||| || |    
T  90916 catcaactagatgtcaaaaatgcttttttgcatggaaatcttgacgaaaccgtgtatatgcaccagcctcctggattctgtgatccacaatatcctgagc 91015  T
Q  165 atgtctgtcttctaaagaaatctctatatgg 195  Q
    |||| ||||| || ||||||||||| |||||    
T  91016 atgtttgtctcctcaagaaatctctctatgg 91046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 42731098 - 42731126
Alignment:
Q  65 catcaacttgatgtaaagaatgcttttct 93  Q
    |||||||||||||||||||||||||||||    
T  42731098 catcaacttgatgtaaagaatgcttttct 42731126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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