View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0360_low_33 (Length: 250)
Name: NF0360_low_33
Description: NF0360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0360_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 525035 - 525119
Alignment:
| Q |
44 |
atgaagagagaggggttggaaaatttgtaggtgatttgatgatatataacatgtagaaatgagggaacaacaaaagtgtagggga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
525035 |
atgaagagagaggggttggaaaatttgtaggtgatttgatgatatataacatgtagaaatgagggaacaacaaaagtgtagggga |
525119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 525152 - 525212
Alignment:
| Q |
161 |
ggaatagagagagaatctgatacgtgtctcaagccaaacaaagcttctcagcaagaaaaga |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
525152 |
ggaatagagagagaatctgatacgtgtctcaagccaaacaaagcttctcagcaagaaaaga |
525212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 358302 - 358253
Alignment:
| Q |
44 |
atgaagagaga--ggggttggaaaatttgtaggtgatttgatgatatata |
91 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
358302 |
atgaagagagaacggggttgaaaaatttgtaggtgatttgatgatatata |
358253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 363937 - 363896
Alignment:
| Q |
48 |
agagagaggggttggaaaatttgtaggtgatttgatgatata |
89 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| |||| |
|
|
| T |
363937 |
agagagagaggttggaaaatttgtaggtgattggatgctata |
363896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 363803 - 363767
Alignment:
| Q |
55 |
ggggttggaaaatttgtaggtgatttgatgatatata |
91 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
363803 |
ggggttgaaaaatttgtaggtgatttcatgatatata |
363767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 18376304 - 18376266
Alignment:
| Q |
178 |
tgatacgtgtctcaagccaaacaaagcttctcagcaaga |
216 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
18376304 |
tgatacgtgtcccatgccaaacaaagcttctcagcaaga |
18376266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 507 times since January 2019
Visitors: 3060