View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0360_low_39 (Length: 206)
Name: NF0360_low_39
Description: NF0360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0360_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 40957994 - 40957885
Alignment:
| Q |
20 |
acacgtatgcttaacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacctacttttttc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40957994 |
acacgtatgcttaacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacctccttttttc |
40957895 |
T |
|
| Q |
120 |
tctgcttcat |
129 |
Q |
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|||||||||| |
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| T |
40957894 |
tctgcttcat |
40957885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 40945001 - 40944890
Alignment:
| Q |
20 |
acacgtatgcttaacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacctacttttttc |
119 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| | ||| |||||||||||||| | | |||||| || ||| ||||||||| |||||||| | ||||| |
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| T |
40945001 |
acacttatgcataacagattctgcaggaacctcatctcggtggaaactataaaacagctctctggtgtcaacggattgccagctaccacctccctttttt |
40944902 |
T |
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| Q |
120 |
tctgcttcatct |
131 |
Q |
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|||||||||||| |
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| T |
40944901 |
tctgcttcatct |
40944890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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