View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0360_low_5 (Length: 436)
Name: NF0360_low_5
Description: NF0360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0360_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 76 - 407
Target Start/End: Complemental strand, 6716749 - 6716421
Alignment:
| Q |
76 |
agggcggtagttttttgtgcttgtacttcaattgttgtttgtaatccttccatgattcaggcaacttcttgatcatgaggccagctacaaattcgttagg |
175 |
Q |
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| T |
6716749 |
agggcggtagttttttgtgcttgtacttcaattgttgtttgtaatccttccatgattcaggcaacttcttgatcatgaggccagctacaaactcgtttgg |
6716650 |
T |
|
| Q |
176 |
gacatggaaattttcagcctttaattcctcaaggctcaagcaacttgtaatatccattgatttgatacttaatctc-ttgtcctctatcattgtaatgtc |
274 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
6716649 |
gacatggatattttcagcctttaattcctcaaggctcaagcaacttgtaatatccattgatttgatgcttaatctctttgtcctctatcattgtaatgtc |
6716550 |
T |
|
| Q |
275 |
cagcagaattagttgcctacgaagaagttattctttccagcatcttcaacaatgtatttcaaaacattgaatcccggtcatatttctttcacttccttgt |
374 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
6716549 |
cagcagaagtagttgcctacgaagaagttattctttccagcatcttcaacaatgtatttcaaaacattgaatcc----catatttctttcgcttccttgt |
6716454 |
T |
|
| Q |
375 |
acaagcagtgcaaatcgaacagctagttagata |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
6716453 |
acaagcagtgcaaatcgaacagctagttagata |
6716421 |
T |
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