View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0360_low_7 (Length: 402)
Name: NF0360_low_7
Description: NF0360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0360_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 40772626 - 40772718
Alignment:
| Q |
99 |
aaacaaatcaatcactcccatatggagtaaggagccagaggaaacaagtactgagtataacatataattttataacaagtcgtgtacaactaa |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40772626 |
aaacaaatcaatcactcccatatggagtaaggagccagaggaaacaagtactgagtataacatataattttataacaagtcgtgtacaactaa |
40772718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 40772712 - 40772809
Alignment:
| Q |
227 |
caaccaaattgacaagcaccataaataatttaaaacaaaaatattacagaggtgaaggacttctcagctcaaaaaataattaagccagtgatttctat |
324 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40772712 |
caactaaattgacaagcaccataaataattaaaaacaaaaatattacagaggtgaaggacttctcagctcaaaaaataattaagccggtgatttctat |
40772809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 706 times since January 2019
Visitors: 3064