View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0360_low_8 (Length: 388)

Name: NF0360_low_8
Description: NF0360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0360_low_8
NF0360_low_8
[»] chr3 (3 HSPs)
chr3 (1-329)||(8139438-8139761)
chr3 (2-54)||(28093347-28093399)
chr3 (1-45)||(28430580-28430624)
[»] chr4 (10 HSPs)
chr4 (1-45)||(50380851-50380895)
chr4 (1-45)||(32923245-32923289)
chr4 (2-45)||(51465339-51465382)
chr4 (3-45)||(8415512-8415554)
chr4 (1-42)||(50668345-50668386)
chr4 (5-53)||(13984661-13984709)
chr4 (1-45)||(20845231-20845275)
chr4 (1-45)||(40070983-40071027)
chr4 (1-57)||(43722755-43722811)
chr4 (1-45)||(44221449-44221493)
[»] chr5 (5 HSPs)
chr5 (1-45)||(42515809-42515853)
chr5 (1-40)||(36162904-36162943)
chr5 (1-34)||(12909181-12909214)
chr5 (1-45)||(18589882-18589926)
chr5 (1-45)||(26034623-26034667)
[»] chr7 (2 HSPs)
chr7 (12-54)||(31292795-31292837)
chr7 (1-57)||(5041329-5041385)
[»] chr6 (4 HSPs)
chr6 (1-54)||(9111040-9111093)
chr6 (1-45)||(12700436-12700480)
chr6 (1-37)||(16276708-16276744)
chr6 (1-45)||(28951401-28951445)
[»] chr1 (6 HSPs)
chr1 (4-45)||(30003203-30003244)
chr1 (1-45)||(3573339-3573383)
chr1 (1-53)||(17221535-17221587)
chr1 (1-45)||(28832186-28832230)
chr1 (1-37)||(29999369-29999405)
chr1 (1-37)||(40948928-40948964)
[»] chr8 (1 HSPs)
chr8 (2-42)||(5830313-5830353)
[»] chr2 (4 HSPs)
chr2 (1-37)||(19043119-19043155)
chr2 (1-33)||(32957558-32957590)
chr2 (1-53)||(35727431-35727483)
chr2 (1-37)||(39836724-39836760)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 8139761 - 8139438
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctctcggggacatattatatattaacttattcatgtgggcatagctcagttagtagag 100  Q
    ||||| |||| |||||||||||| |||||||||| || ||||||| || ||| |  ||||||||||| |||| |||||||||||||||| |||| | |||    
T  8139761 accttgcatatattatgcattgtccataccaactaaactaagctcacgaggatagtttatatattaatttatccatgtgggcatagctcggttaattgag 8139662  T
Q  101 acgatgcattataatatgcagggtcagggttcaaccttgaacacctcatctatcattttaaaagatgaattctaactagtctgtagactatttgacgagn 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||  ||||||||||||||| |||| ||||||||||||      
T  8139661 acgatgcattataatatgcagggtcagggttcaaccttaaacacctcacctatcactttgaaaagtgaattctaactagtttgtaaactatttgacga-a 8139563  T
Q  201 nnnnnnnttatttcaacatttttatttcacttagtaagnnnnnnnnnnnctattttatttagaaaagaattaagttattagggtgttacttacgctatat 300  Q
           ||||   ||||||||||||||||||||||||           ||||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  8139562 aaaaaaattatactaacatttttatttcacttagtaag----aaaaaaactattttatttggaaaggaattaagatattagggtgttacttacgctatat 8139467  T
Q  301 ttttatttaaaaatcccttatattcatct 329  Q
    |||||||||||||||||||||||||||||    
T  8139466 ttttatttaaaaatcccttatattcatct 8139438  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 28093399 - 28093347
Alignment:
Q  2 ccttacatagattatgcattgttcataccaacttaattaagctctcggggaca 54  Q
    |||| |||| |||||||||||| |||||||||| |||||| ||| ||||||||    
T  28093399 ccttgcatatattatgcattgtccataccaactgaattaaactcacggggaca 28093347  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28430580 - 28430624
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    ||||| |||| |||||||||||||| |||||||| ||||||||||    
T  28430580 accttgcatatattatgcattgttcgtaccaactgaattaagctc 28430624  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50380851 - 50380895
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||    
T  50380851 accttacatatattatgcattgttcataccaactgaattaagctc 50380895  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32923245 - 32923289
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    |||||||||| ||||||||||||||||||||||| | ||||||||    
T  32923245 accttacatatattatgcattgttcataccaactgagttaagctc 32923289  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 51465382 - 51465339
Alignment:
Q  2 ccttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||    
T  51465382 ccttacatatattatgcattgtccataccaactgaattaagctc 51465339  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 8415512 - 8415554
Alignment:
Q  3 cttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    |||||||| |||||||||||| |||||||||| ||||||||||    
T  8415512 cttacatatattatgcattgtccataccaactgaattaagctc 8415554  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50668386 - 50668345
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaag 42  Q
    |||||||||| |||||| |||||||||||||||| |||||||    
T  50668386 accttacatatattatgtattgttcataccaactgaattaag 50668345  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 13984661 - 13984709
Alignment:
Q  5 tacatagattatgcattgttcataccaacttaattaagctctcggggac 53  Q
    |||||| |||||||||||||| |||||||| | |||||||| |||||||    
T  13984661 tacatatattatgcattgttcctaccaactgagttaagctcacggggac 13984709  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20845231 - 20845275
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    |||||||||| ||||||||||||||| ||||||  ||||||||||    
T  20845231 accttacatatattatgcattgttcaaaccaacaaaattaagctc 20845275  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40070983 - 40071027
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    ||||| |||| ||||||||||||||||||||||| | ||||||||    
T  40070983 accttgcatatattatgcattgttcataccaactgagttaagctc 40071027  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43722811 - 43722755
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctctcggggacatat 57  Q
    |||||||||| |||||||||||| |||||||||| | |||| ||| || ||||||||    
T  43722811 accttacatatattatgcattgtccataccaactgagttaaactcacgaggacatat 43722755  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44221493 - 44221449
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    ||||| |||| |||||||||||| |||||||||| ||||||||||    
T  44221493 accttgcatatattatgcattgtccataccaactgaattaagctc 44221449  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42515853 - 42515809
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||    
T  42515853 accttacatatattatgcattgtccataccaactgaattaagctc 42515809  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36162904 - 36162943
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaatta 40  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  36162904 accttacatatattatgcattgttcataccaactgaatta 36162943  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12909181 - 12909214
Alignment:
Q  1 accttacatagattatgcattgttcataccaact 34  Q
    |||||||||| |||||||||||||||||||||||    
T  12909181 accttacatatattatgcattgttcataccaact 12909214  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18589882 - 18589926
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    ||||| |||| ||||||||||||||||||||||| | ||||||||    
T  18589882 accttgcatatattatgcattgttcataccaactgagttaagctc 18589926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26034623 - 26034667
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    ||||| |||| ||||||||||||||||||||||| | ||||||||    
T  26034623 acctttcatatattatgcattgttcataccaactgagttaagctc 26034667  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 31292795 - 31292837
Alignment:
Q  12 attatgcattgttcataccaacttaattaagctctcggggaca 54  Q
    ||||||||||||||||||||||| | |||||||| ||||||||    
T  31292795 attatgcattgttcataccaactgacttaagctcacggggaca 31292837  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5041385 - 5041329
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctctcggggacatat 57  Q
    ||||| |||| |||||||||||| |||||||||| | |||||||| || ||||||||    
T  5041385 accttgcatatattatgcattgtccataccaactcagttaagctcacgaggacatat 5041329  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9111093 - 9111040
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctctcggggaca 54  Q
    ||||| |||| ||||||||||||||||||||||| || ||||||| || |||||    
T  9111093 accttgcatatattatgcattgttcataccaactgaactaagctcacgaggaca 9111040  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12700436 - 12700480
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    ||||| |||| ||||||||||||||||||||||| || |||||||    
T  12700436 accttgcatatattatgcattgttcataccaactgaactaagctc 12700480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16276708 - 16276744
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaa 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  16276708 accttacatatattatgcattgtccataccaacttaa 16276744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28951445 - 28951401
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    ||||| |||| ||||||||||||||||||||||| | ||||||||    
T  28951445 accttgcatatattatgcattgttcataccaactgagttaagctc 28951401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 30003244 - 30003203
Alignment:
Q  4 ttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    ||||||| |||||||||||| |||||||||| ||||||||||    
T  30003244 ttacatatattatgcattgtccataccaactgaattaagctc 30003203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3573339 - 3573383
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    |||||||||| |||||||||||||| |||||||| | ||||||||    
T  3573339 accttacatatattatgcattgttcctaccaactgagttaagctc 3573383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17221535 - 17221587
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctctcggggac 53  Q
    ||||| |||| |||||||||||||| |||||||||| |||| ||| |||||||    
T  17221535 accttgcatatattatgcattgttcttaccaacttagttaaactcacggggac 17221587  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28832186 - 28832230
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctc 45  Q
    ||||| |||| ||||||||||||||||||||||| | ||||||||    
T  28832186 accttgcatatattatgcattgttcataccaactgagttaagctc 28832230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29999369 - 29999405
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaa 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  29999369 accttacatatattatgcattgtccataccaacttaa 29999405  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40948964 - 40948928
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaa 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  40948964 accttacatatattatgcattgtccataccaacttaa 40948928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 5830313 - 5830353
Alignment:
Q  2 ccttacatagattatgcattgttcataccaacttaattaag 42  Q
    ||||||||| ||||| ||||||||||||||||| |||||||    
T  5830313 ccttacatatattatacattgttcataccaactaaattaag 5830353  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19043155 - 19043119
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaa 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  19043155 accttacatatattatgcattgtccataccaacttaa 19043119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32957558 - 32957590
Alignment:
Q  1 accttacatagattatgcattgttcataccaac 33  Q
    |||||||||| ||||||||||||||||||||||    
T  32957558 accttacatatattatgcattgttcataccaac 32957590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35727483 - 35727431
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaattaagctctcggggac 53  Q
    ||||| |||| |||||||||||||| |||||||| | |||||||| |||||||    
T  35727483 accttgcatatattatgcattgttcttaccaactgagttaagctcacggggac 35727431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39836724 - 39836760
Alignment:
Q  1 accttacatagattatgcattgttcataccaacttaa 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  39836724 accttacatatattatgcattgtccataccaacttaa 39836760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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