View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0361_high_13 (Length: 303)

Name: NF0361_high_13
Description: NF0361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0361_high_13
NF0361_high_13
[»] chr5 (22 HSPs)
chr5 (58-251)||(1722672-1722865)
chr5 (62-241)||(20728800-20728980)
chr5 (62-251)||(19278977-19279167)
chr5 (62-241)||(5734654-5734833)
chr5 (62-238)||(35190177-35190354)
chr5 (62-241)||(30737929-30738108)
chr5 (62-241)||(36418153-36418333)
chr5 (69-251)||(13543366-13543547)
chr5 (62-241)||(38405225-38405406)
chr5 (62-237)||(18320898-18321073)
chr5 (62-241)||(26275679-26275859)
chr5 (154-241)||(18249147-18249234)
chr5 (154-234)||(19278900-19278980)
chr5 (177-233)||(38082744-38082800)
chr5 (154-241)||(5734830-5734917)
chr5 (154-241)||(35190093-35190180)
chr5 (177-227)||(13543289-13543339)
chr5 (177-223)||(20728734-20728780)
chr5 (154-241)||(26275856-26275943)
chr5 (57-143)||(28044357-28044445)
chr5 (177-236)||(32459552-32459611)
chr5 (188-241)||(38405436-38405489)
[»] chr7 (30 HSPs)
chr7 (58-243)||(42990687-42990873)
chr7 (62-238)||(8039917-8040093)
chr7 (62-251)||(1441136-1441324)
chr7 (64-251)||(27995240-27995427)
chr7 (62-251)||(33235307-33235497)
chr7 (62-237)||(39958950-39959125)
chr7 (62-218)||(20184039-20184195)
chr7 (62-251)||(5559288-5559479)
chr7 (62-241)||(35215079-35215259)
chr7 (62-241)||(5805311-5805489)
chr7 (62-241)||(1348914-1349084)
chr7 (62-201)||(29590806-29590945)
chr7 (133-250)||(28256674-28256791)
chr7 (62-241)||(23679292-23679466)
chr7 (171-241)||(5075472-5075542)
chr7 (154-241)||(1348830-1348917)
chr7 (177-241)||(1286557-1286621)
chr7 (153-241)||(5559475-5559563)
chr7 (168-243)||(42990880-42990955)
chr7 (177-241)||(8039835-8039900)
chr7 (176-241)||(35214996-35215060)
chr7 (177-241)||(5805227-5805291)
chr7 (177-237)||(31175825-31175885)
chr7 (177-240)||(20366408-20366471)
chr7 (78-115)||(20366336-20366373)
chr7 (177-233)||(20183963-20184019)
chr7 (177-233)||(29590972-29591028)
chr7 (154-241)||(28256795-28256881)
chr7 (177-233)||(10619997-10620052)
chr7 (62-110)||(10620054-10620102)
[»] chr8 (30 HSPs)
chr8 (62-241)||(30576424-30576604)
chr8 (62-251)||(8714118-8714307)
chr8 (62-241)||(9276755-9276935)
chr8 (58-243)||(39701152-39701339)
chr8 (78-241)||(6235918-6236082)
chr8 (62-241)||(23553543-23553729)
chr8 (93-227)||(44040964-44041099)
chr8 (62-251)||(25737282-25737470)
chr8 (62-233)||(16197300-16197472)
chr8 (62-237)||(4613932-4614108)
chr8 (62-148)||(25729898-25729984)
chr8 (62-142)||(40553028-40553108)
chr8 (133-233)||(14871109-14871210)
chr8 (177-243)||(8714032-8714098)
chr8 (154-251)||(40553105-40553202)
chr8 (181-241)||(14871241-14871301)
chr8 (177-241)||(30576340-30576404)
chr8 (155-234)||(6236096-6236175)
chr8 (154-232)||(23179160-23179238)
chr8 (159-225)||(44041150-44041216)
chr8 (172-241)||(9276671-9276740)
chr8 (177-238)||(16197220-16197281)
chr8 (181-241)||(5358954-5359014)
chr8 (177-241)||(25730003-25730067)
chr8 (177-241)||(25737489-25737553)
chr8 (66-125)||(5358859-5358918)
chr8 (177-238)||(40552953-40553014)
chr8 (177-241)||(23553749-23553812)
chr8 (177-233)||(34686778-34686834)
chr8 (177-241)||(39701073-39701136)
[»] chr1 (19 HSPs)
chr1 (66-238)||(34254775-34254946)
chr1 (67-241)||(29418805-29418980)
chr1 (58-241)||(8902950-8903134)
chr1 (62-241)||(10686385-10686565)
chr1 (63-241)||(4772282-4772460)
chr1 (133-251)||(49650844-49650962)
chr1 (83-238)||(4030434-4030590)
chr1 (62-143)||(37663319-37663399)
chr1 (62-143)||(48352466-48352547)
chr1 (62-125)||(27351332-27351395)
chr1 (156-241)||(49650754-49650839)
chr1 (154-241)||(27351392-27351479)
chr1 (154-241)||(39302454-39302541)
chr1 (177-237)||(8903150-8903210)
chr1 (177-227)||(34254701-34254751)
chr1 (154-240)||(37663236-37663322)
chr1 (154-227)||(27351257-27351330)
chr1 (188-241)||(48352389-48352442)
chr1 (177-249)||(4772517-4772589)
[»] scaffold0027 (2 HSPs)
scaffold0027 (62-241)||(9658-9837)
scaffold0027 (154-233)||(9582-9661)
[»] chr6 (14 HSPs)
chr6 (62-241)||(17179813-17179992)
chr6 (67-241)||(17131979-17132153)
chr6 (63-239)||(9902090-9902267)
chr6 (62-227)||(11527800-11527966)
chr6 (64-241)||(24139179-24139358)
chr6 (62-232)||(28630318-28630477)
chr6 (62-161)||(10963011-10963108)
chr6 (178-251)||(17131701-17131773)
chr6 (182-251)||(2839937-2840006)
chr6 (177-241)||(28630497-28630561)
chr6 (154-241)||(10962927-10963014)
chr6 (177-238)||(9946586-9946647)
chr6 (186-241)||(24139388-24139443)
chr6 (177-241)||(17180012-17180076)
[»] chr3 (13 HSPs)
chr3 (62-241)||(31247315-31247495)
chr3 (62-241)||(53783148-53783328)
chr3 (62-241)||(3087228-3087408)
chr3 (62-201)||(4276409-4276548)
chr3 (154-241)||(35555831-35555918)
chr3 (171-241)||(14629404-14629474)
chr3 (153-251)||(24707586-24707684)
chr3 (177-241)||(14629540-14629604)
chr3 (154-234)||(53783071-53783151)
chr3 (177-241)||(4276324-4276388)
chr3 (154-241)||(21376755-21376842)
chr3 (133-238)||(35555719-35555827)
chr3 (133-232)||(21376846-21376946)
[»] scaffold0070 (2 HSPs)
scaffold0070 (62-251)||(28816-29004)
scaffold0070 (177-241)||(28733-28797)
[»] chr2 (13 HSPs)
chr2 (62-241)||(11871506-11871686)
chr2 (58-241)||(15506256-15506440)
chr2 (62-241)||(20535631-20535811)
chr2 (62-219)||(19080901-19081057)
chr2 (62-216)||(27893257-27893412)
chr2 (64-232)||(39301590-39301759)
chr2 (62-153)||(36196264-36196355)
chr2 (154-238)||(36196352-36196436)
chr2 (154-251)||(19080807-19080904)
chr2 (154-241)||(27893409-27893496)
chr2 (177-241)||(20535831-20535895)
chr2 (62-125)||(42117002-42117065)
chr2 (203-241)||(27893214-27893252)
[»] chr4 (15 HSPs)
chr4 (62-251)||(52567862-52568050)
chr4 (62-241)||(52866119-52866298)
chr4 (93-251)||(30542924-30543082)
chr4 (62-143)||(19681461-19681542)
chr4 (62-189)||(31229491-31229619)
chr4 (78-241)||(5387392-5387556)
chr4 (68-239)||(8408532-8408707)
chr4 (62-139)||(19632021-19632098)
chr4 (154-251)||(52181894-52181991)
chr4 (154-241)||(19681377-19681464)
chr4 (177-241)||(19632118-19632182)
chr4 (154-225)||(52568047-52568118)
chr4 (153-241)||(30542809-30542897)
chr4 (177-241)||(31229639-31229703)
chr4 (184-241)||(52182046-52182103)
[»] scaffold0746 (2 HSPs)
scaffold0746 (70-251)||(199-379)
scaffold0746 (177-241)||(406-470)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 58 - 251
Target Start/End: Complemental strand, 1722865 - 1722672
Alignment:
Q  58 tcataaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatattt 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1722865 tcataaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatattt 1722766  T
Q  158 gtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1722765 gtgatcattgaatgtaacattttgacaccctgaagcttttaaaaggcagcgttttgatccaagtcaacaatttaacggctacattaacatcaat 1722672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 20728800 - 20728980
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| || |||||| |||||||    
T  20728800 aaatgatcatttatagtgctagaaagacaactatttacaacaacaaatgtctttctagcaatattacacaacatttatagtgctagaatgatcatttgtg 20728899  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| ||  |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||    
T  20728900 acaattaaacttaacgttttgacaccctggagcttttaaaatgcagcgttttgatcaaagtcaacaacttaacagctacat 20728980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 19278977 - 19279167
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||| || | |||| |||| ||    
T  19278977 aaatgatcatttatagtgctagaaatgcaactatttacaacaacaattgcctttctagcactattaaacgacatttatagtgctagagtgatcatttatg 19279076  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    | |||| |||||||  |||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||  |||||| || ||||||    
T  19279077 accattaaatgtaatgttttgacaccctggagattttaaaatgcaacgttttgatccaagttaacaacttaacaactacatcaacatcaat 19279167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 5734833 - 5734654
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || || |||||| |||||||    
T  5734833 aaatgatcatttatagtgctagaaagacaactatttacgacaacaaatgcctttctagcactattaaacgacatttatattgctagaatgatcatttgtg 5734734  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| || ||||| |||||||||| |||||||||| |||  || |||||||||| ||||||| || |||||||||||||    
T  5734733 acgattaaacgtaacgttttgacaccttggagctttt-aaagacaacgttttgatcaaagtcaaaaacttaacggctacat 5734654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 35190177 - 35190354
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||| | | ||| |||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| || |||||| ||||| |    
T  35190177 aaatgatcatttaaagttctataaagacaactatttacaacaacaaatatgtttcaagcactattaaacgacatttatagtggtagaatgatcatttgcg 35190276  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggcta 238  Q
    |  ||| || ||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||| ||||| ||||    
T  35190277 acgattaaacgtaacattttgacaccctgaagcttttaaaaggcagcattttgatcaaagtcaacaaattaaccgcta 35190354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 30738108 - 30737929
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||| || |||||| |||||||    
T  30738108 aaattatcatttatagtgctagaaagacaactatttacaacaacaaa-gtctttttggcactattaaacaacatttatagtgttagaatgatcatttgtg 30738010  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| || |||||||||||||||| ||| ||||||||||  |||  ||||||||||||||||||| |||||| ||||||    
T  30738009 acgattaaacgtaacattttgacaccttggggcttttaaaaaacagtattttgatccaagtcaacaacttaacgactacat 30737929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 36418153 - 36418333
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| |||||  |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |  || |||||| |||||||    
T  36418153 aaatgatcatttatagtgctaataagacagctatttacaacaataaatgtctttctagcactattaaacgacatttataatactagaatgatcatttgtg 36418252  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| || ||||  ||||||| | | |||||||||||||  || ||||||||| ||||||||||| |||||||||||||    
T  36418253 acgattaaacgtaatgttttgactcaccggagcttttaaaagacaacgttttgattcaagtcaacaacttaacggctacat 36418333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 13543366 - 13543547
Alignment:
Q  69 catttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtgatcattga 168  Q
    |||||||| |||||||||| || |||||||||||||||||||||| | | ||||||||||||||||||||||||| || |||||||||| ||| |||| |    
T  13543366 catttatagtgctagaaaggcagctatttacaacaacaaatgtctctat-gcactattaaacgacatttatagtgctagaatgatatttttgaccattaa 13543464  T
Q  169 atgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    | ||||  |||||| ||| || |||||||||||  || | ||||||||||||||||||| ||||||| ||||| || ||||||    
T  13543465 acgtaatgttttgataccttgaagcttttaaaagacaacattttgatccaagtcaacaacttaacggttacatcaacatcaat 13543547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 38405406 - 38405225
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||||||||||||||| | | ||||| | |||||||||||||||||||| |||||||||| |||||||||| |   ||||| |||||||    
T  38405406 aaatgatcatttataatgctagaaagatagccatttatagcaacaaatgtctttctagcattattaaacgatatttatagtgctgggatgatcatttgtg 38405307  T
Q  161 atcattgaatgtaacattttgacaccctggagc-ttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    | ||||  | |||| ||||||||||| || ||| ||||||||||||||||||||||||||||||| || |||| | ||||||    
T  38405306 accattacacgtaatattttgacaccttgaagctttttaaaatgcagcgttttgatccaagtcaataacttaaagactacat 38405225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 18321073 - 18320898
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||  |||||| |||| || |||||| |||| ||    
T  18321073 aaatgatcatttatagtgctacaaagacaactatttacaacaacaaatgtctttctagcattattaaacagcatttaaagtgctagaatgatcatttttg 18320974  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggct 237  Q
    |  ||| ||| |||| |||||||| |||  | ||||| ||| | ||| ||||||||||||||||||| |||||||||    
T  18320973 acgattaaatataacgttttgacatcctaaaactttt-aaagggagcattttgatccaagtcaacaacttaacggct 18320898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 26275859 - 26275679
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    |||||||| |||||| | ||||||||  | ||||||||||| |||||| |||||||||||||||| |||| ||||||||||| || |||||| |||||||    
T  26275859 aaatgatcctttatagttctagaaaggaagctatttacaacgacaaatttctttctagcactattgaacgtcatttatagtgctagaatgatcatttgtg 26275760  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    | || |||| ||||| |||||||| ||| |||||||||||| ||| | |||||||| |||| ||||| |||||| ||||||    
T  26275759 accactgaacgtaactttttgacatcctagagcttttaaaaggcatcattttgatctaagttaacaacttaacgactacat 26275679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 18249234 - 18249147
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||  ||| |||||||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |||||||||||    
T  18249234 atttgtgactattaaatgtaacgttttgacaccctagagcttttaaaatgcagcattttgatccaaatcaacaactcaacggctacat 18249147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 19278980 - 19278900
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacg 234  Q
    ||||||||| ||| || ||| | |||||||| |||||| |||||||||  || ||||||||||||||||||||| ||||||    
T  19278980 atttgtgataattaaacgtagcgttttgacatcctggaacttttaaaagacaacgttttgatccaagtcaacaacttaacg 19278900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 38082800 - 38082744
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaac 233  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||| || ||||||||    
T  38082800 ttttgacaccctgaagcctttaaaatgaagcgttttgatccaagtgaataatttaac 38082744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 5734830 - 5734917
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||||| | || ||| |||||||||||| | | |||||||||| ||||| |||||||  |||||||||| ||||||| |||||    
T  5734830 atttgtgatcaataaacgtagcattttgacaccatcgggcttttaaaaggcagcattttgatttaagtcaacaacttaacggttacat 5734917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 35190180 - 35190093
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||| |||| || ||| | ||| |||||||| |||||||| ||| ||| | ||||||||||||||||||| |||||| ||||||    
T  35190180 atttgtgaccattaaacgtagcgtttggacaccctagagcttttgaaaggcaacattttgatccaagtcaacaacttaacgactacat 35190093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 13543339 - 13543289
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaa 227  Q
    ||||||||||||| | ||||||||| ||| |||||||||||||||||||||    
T  13543339 ttttgacaccctgaaacttttaaaaggcaacgttttgatccaagtcaacaa 13543289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 20728780 - 20728734
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtca 223  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||    
T  20728780 ttttgacactctggagcttttaaaagacagcgttttgatccaagtca 20728734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 26275856 - 26275943
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||| |||| || ||| | |||||||||  | |||||||||||| ||||| |||||||||||||||  |||||| || ||||||    
T  26275856 atttgtgaccattaaacgtaccgttttgacactatagagcttttaaaaggcagcattttgatccaagtcagtaatttatcgactacat 26275943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 28044357 - 28044445
Alignment:
Q  57 ttcataaatgatcatttataatgctagaaagacaactatttacaa---caacaaatgtctttctagcactattaaacgacatttatagtg 143  Q
    |||| ||||||||||||||| || ||||| | || ||||||||||   ||||||||| ||||||| |||||||||| || ||||||||||    
T  28044357 ttcacaaatgatcatttatagtgttagaagg-cagctatttacaacaacaacaaatgcctttctaacactattaaatgatatttatagtg 28044445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 32459611 - 32459552
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggc 236  Q
    ||||||||| ||||||| ||||||||| |||||||||||| ||| || ||| ||||||||    
T  32459611 ttttgacacactggagcctttaaaatgtagcgttttgatctaaggcagcaacttaacggc 32459552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 38405436 - 38405489
Alignment:
Q  188 tggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||||||||| || | ||||||||||||| ||||| ||||||| |||||    
T  38405436 tggagcttttaaaatacaacattttgatccaagttaacaacttaacggttacat 38405489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 58 - 243
Target Start/End: Complemental strand, 42990873 - 42990687
Alignment:
Q  58 tcataaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-att 156  Q
    |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| ||     
T  42990873 tcataaatgatcttttatagtgctagaaatacaactatttacaacaacaaatgtctttctagcactattaaacgacatttataatgctataatgatcatc 42990774  T
Q  157 tgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacatta 243  Q
    |||||  ||| || ||||||||||||||||||  | ||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  42990773 tgtgacgattaaacgtaacattttgacaccctataacttttaaaaggcagcgttttgatccaagtcaacaacttaacggctacatta 42990687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 8039917 - 8040093
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtga 161  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||||||| |||    
T  8039917 aaatgatcatttatagtgctagaaagacagctatttacaacaacaaatgtctttatagcattattaaacgatatttatagtgctaaaatgatatttatga 8040016  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggcta 238  Q
     |||| ||  ||||||||||||| |||||||||||||||| |||||||||| ||| |||||||||| ||||||||||    
T  8040017 ccattaaacataacattttgacatcctggagcttttaaaaggcagcgttttaatcaaagtcaacaacttaacggcta 8040093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 62 - 251
Target Start/End: Complemental strand, 1441324 - 1441136
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtga 161  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| || || ||||||||||||||||||||| |||||||||||||||||    
T  1441324 aaatgatcatttatagtgctagaaa-acagctatttacaacaacaaatgtctttttaccattattaaacgacatttatagtgctaaaatgatatttgtga 1441226  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
     |||| ||  |||| ||||||||||   || ||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||||    
T  1441225 ccattaaacataacgttttgacaccgcagaacttttaaaatgcagcgttttgatccaagttaacaatttaacgactacatcaacatcaat 1441136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 64 - 251
Target Start/End: Complemental strand, 27995427 - 27995240
Alignment:
Q  64 atgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtgatc 163  Q
    ||||||||||||| |||||||||  || |||||||||||||| || | |||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  27995427 atgatcatttatagtgctagaaatgcagctatttacaacaacgaaagcctttctagcactattaaacgacatttatagtgctaaaatgatatttgtgacc 27995328  T
Q  164 attgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    ||| || ||||||||||||||||||| ||||||||| | | ||| |||||||| |||||||||| |||||||| |||| || ||||||    
T  27995327 attaaacgtaacattttgacaccctgaagcttttaataggaagcattttgatcaaagtcaacaacttaacggcaacatcaacatcaat 27995240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 33235307 - 33235497
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| || |||||| |||  ||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||    
T  33235307 aaatgatcatttatagtgttagaaaaacagttatttacaacaacaaatgtctttctagcactattaaatgacatttatagtgctagaatgatcatttgtg 33235406  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    | |||| || ||||||||||| ||||||| ||||||||||||||  | ||||||||||||||||||| || |||||||||| | |||||||    
T  33235407 accattaaacgtaacattttggcaccctgaagcttttaaaatgcgacattttgatccaagtcaacaacttgacggctacatcagtatcaat 33235497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 39958950 - 39959125
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtga 161  Q
    ||||||||||||||| |||||||||| || || |||||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||    
T  39958950 aaatgatcatttatagtgctagaaagtcagctgtttacaccaacaaatgtctttctagcactattaaacaacatttatagtgctacaatgatatttgtga 39959049  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggct 237  Q
     |||| || ||||| |||||||| |||| | ||| || || ||||||||||||||||||||||||| |||||||||    
T  39959050 ccattaaacgtaacgttttgacatcctgaaacttctacaaggcagcgttttgatccaagtcaacaacttaacggct 39959125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 20184039 - 20184195
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| ||| || |||||| ||||| |    
T  20184039 aaatgatcatttatagtgctagaaagacaactatttacaacaac-aatgtctttctagcattattaaaagacatttattgtgctagaatgatcatttgcg 20184137  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatcca 218  Q
    | |||| |||||||| |||||||||| || |||||||||||  |||||||||||||||    
T  20184138 accattaaatgtaacgttttgacaccttgaagcttttaaaagacagcgttttgatcca 20184195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 62 - 251
Target Start/End: Complemental strand, 5559479 - 5559288
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactattt--acaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgt 159  Q
    |||| |||||||||| |||||||||| ||  |||||  |||||||||||||  |||||||||| ||||||| ||||||||| || || ||||||||||||    
T  5559479 aaataatcatttatagtgctagaaaggcagatatttttacaacaacaaatgcatttctagcacaattaaacaacatttataatgctagaatgatatttgt 5559380  T
Q  160 gatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    || |||| |  ||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| |||| | |||||| || ||||||    
T  5559379 gaccattaaccgtaacgttttgacaccctggagattttaaaaggcggcgttttgatccaagtcaacaacttaatgactacatcaacatcaat 5559288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 35215079 - 35215259
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| |||||||| |||| ||||||||||| | |||||||||||||||||||||||| |||| || ||||| || ||| || |||||||    
T  35215079 aaatgatcatttatagtgctagaatgacatctatttacaaccataaatgtctttctagcactattaaatgacacttgtagtgttagaattatcatttgtg 35215178  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| || |||||||||||||||| || ||||||||||| ||| || ||||||||| || ||||| |||||||||||||    
T  35215179 acgattaaacgtaacattttgacaccttgaagcttttaaaaggcaacgctttgatccatgttaacaacttaacggctacat 35215259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 5805311 - 5805489
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| ||||| ||||| | |||||||||| ||||||||||||||||||||||||||| |  |||||||||| || |||||| |||||||    
T  5805311 aaatgatcatttatagtgctaaaaagaaagctatttacaataacaaatgtctttctagcactattaaatg--atttatagtgttagaatgatcatttgtg 5805408  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  |||  | ||||  |||||||||||| || |||||||||  |||||||||||||||||||||||| |||| ||||||||    
T  5805409 acgattacacgtaaagttttgacaccctagaacttttaaaagacagcgttttgatccaagtcaacaacttaaaggctacat 5805489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 1348914 - 1349084
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtga 161  Q
    |||||||||||| || ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| || || |         ||||    
T  1348914 aaatgatcatttgtagtgctagaaagacagctatttaaaacaataaatgtctttctagcactattaaacgacatttatattgctaga---------gtga 1349004  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||| || ||||| ||||||||| ||| | ||||||||| |||||||||||||| |||||||||| |||||| ||||||    
T  1349005 tcattaaacgtaacgttttgacactctgaaacttttaaaaggcagcgttttgatcaaagtcaacaacttaacgactacat 1349084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 29590945 - 29590806
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtga 161  Q
    ||||||| |||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| |||    
T  29590945 aaatgataatttgtagtgctagaaaggcaactatttacaacaacaaatgtctttctagcactattaaatgacatttatagtgccaaaatgatatttatga 29590846  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaa 201  Q
      ||| || ||||  ||||||||||||  | |||||||||    
T  29590845 ctattaaacgtaatcttttgacaccctaaaacttttaaaa 29590806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 28256791 - 28256674
Alignment:
Q  133 catttatagtgataaaatgatatttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaa 232  Q
    ||||||||||| ||||||||||||||||| |||| || ||||| |||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||    
T  28256791 catttatagtgctaaaatgatatttgtgaccattaaacgtaacgttttgacaccctagagtttttaaaaggcagcgttttgatccaagtcaacaacttaa 28256692  T
Q  233 cggctacattaatatcaa 250  Q
    | ||||||| || |||||    
T  28256691 ctgctacatcaacatcaa 28256674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 23679292 - 23679466
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtga 161  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||||||||||| ||||||||||||| || |     |||| |||    
T  23679292 aaatgatcatttatagtgctagaaagacaactatttacaataacaaatgcatttctagcactattaaatgacatttatagtgctaga-----atttatga 23679386  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
      | | |   ||||||||||| |||||||||||||||||    |  |||||||||||||| ||||| |||||||||||||    
T  23679387 cgactaagaataacattttgagaccctggagcttttaaacgataatgttttgatccaagttaacaacttaacggctacat 23679466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 5075542 - 5075472
Alignment:
Q  171 gtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5075542 gtaacgttttgacaccctcgagcttttaaaatgcagcgttttgatccaagtcaacaacttaacggctacat 5075472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 1348917 - 1348830
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||| |||| || ||||| || |||||||||||||||||||||| ||| | |||||||||||||||| ||||||||| ||||||    
T  1348917 atttgtgaccattaaacgtaacgttatgacaccctggagcttttaaaaggcaacattttgatccaagtcaataatttaacgactacat 1348830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 1286621 - 1286557
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||||||||||||||||||| | || |||| ||||||||||||||| |||||||||||||    
T  1286621 ttttgacaccctggagcttttaaaaagtagtgtttggatccaagtcaacaacttaacggctacat 1286557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 5559475 - 5559563
Alignment:
Q  153 tatttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||| |||| || ||| | ||||||||||||||||||||||||| ||||| |||||||| || ||||||| |||||| ||||||    
T  5559475 tatttgtgaccattaaacgtagcgttttgacaccctggagcttttaaaaggcagcattttgatcaaactcaacaacttaacgactacat 5559563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 42990880 - 42990955
Alignment:
Q  168 aatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacatta 243  Q
    |||||| | |||| ||||||| ||| ||||||||| |||| ||||||||||||||||||| |||||||||||||||    
T  42990880 aatgtagcgttttaacacccttgagtttttaaaattcagcattttgatccaagtcaacaacttaacggctacatta 42990955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 8039900 - 8039835
Alignment:
Q  177 ttttgacaccctg-gagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||||||| |||||||||||| ||||| |||||||| |||||||||| |||||||||||||    
T  8039900 ttttgacaccctgcgagcttttaaaaggcagcattttgatcaaagtcaacaacttaacggctacat 8039835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 35215060 - 35214996
Alignment:
Q  176 attttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||||||| |||||||||||| ||||| ||||||||||||||||||| | |||||||||||    
T  35215060 attttgacaccctcgagcttttaaaa-gcagcattttgatccaagtcaacaactaaacggctacat 35214996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 5805291 - 5805227
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||||||| || ||||||||||||||| ||||||||||||||||||| |||| ||| ||||    
T  5805291 ttttgacaccctcgaacttttaaaatgcagcattttgatccaagtcaacaacttaaaggccacat 5805227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 31175825 - 31175885
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggct 237  Q
    |||||||| ||| |||||||||||||| ||| |||| |||||||||||||| |||||||||    
T  31175825 ttttgacatcctcgagcttttaaaatgaagcattttcatccaagtcaacaacttaacggct 31175885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 20366408 - 20366471
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctaca 240  Q
    ||||||||||||||||||||||| |  ||  |||||||||||||||||||| |||| |||||||    
T  20366408 ttttgacaccctggagcttttaacagacattgttttgatccaagtcaacaacttaatggctaca 20366471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 20366336 - 20366373
Alignment:
Q  78 tgctagaaagacaactatttacaacaacaaatgtcttt 115  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20366336 tgctagaaaggcaactatttacaacaacaaatgtcttt 20366373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 20184019 - 20183963
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaac 233  Q
    ||||||||||||  |||||||||||  || ||||||||||||||||||||| |||||    
T  20184019 ttttgacaccctcaagcttttaaaagacaacgttttgatccaagtcaacaacttaac 20183963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 29590972 - 29591028
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaac 233  Q
    |||||||| |||||||||||||||| ||| | ||||||| ||||||||||| |||||    
T  29590972 ttttgacatcctggagcttttaaaaagcatcattttgattcaagtcaacaacttaac 29591028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 28256795 - 28256881
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||| |||| || |||  ||||||||||||| |||||||||||| ||||  ||||| || || |||||||||||||| ||||||    
T  28256795 atttgtgaccattaaacgtagaattttgacaccctagagcttttaaaa-gcagtattttgttctaaatcaacaatttaacgactacat 28256881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 10620052 - 10619997
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaac 233  Q
    |||||||| ||||||| |||||||| ||| | ||||||||||||||||||| |||||    
T  10620052 ttttgacagcctggagtttttaaaa-gcaacattttgatccaagtcaacaacttaac 10619997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 10620102 - 10620054
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatg 110  Q
    ||||||||||||||| |  ||||||| |||||||| |||||||||||||    
T  10620102 aaatgatcatttatagtcttagaaaggcaactattaacaacaacaaatg 10620054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 30576424 - 30576604
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||| || ||||    
T  30576424 aaatgatcagttatagtgctataaagacaactatttacaacaacaaatgtctttatagcactattaaacgacatttatagtgctagaatgatcatctgtg 30576523  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| || ||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||||    
T  30576524 acgattaaacgtaacgttttgacaccctggagcttttaaaaggcaatgttttgatccaagtcaacaacttaacggctacat 30576604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 8714118 - 8714307
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtga 161  Q
    ||||||||||||||| |||||||||  || |||||||||||||||||||| ||| | |||||||||||||||||||||| || || |||||||||| |||    
T  8714118 aaatgatcatttatagtgctagaaaagcagctatttacaacaacaaatgtttttatggcactattaaacgacatttataatgctagaatgatatttttga 8714217  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
     |||| || ||||| |||||  |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| || ||||||    
T  8714218 ccattaaacgtaacgttttgtgaccctggagcttttaaaaggcagcgttttgatccaagtcaataacttaacggctacatcaacatcaat 8714307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 9276755 - 9276935
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||| |||||||||  || |||||| |||||||    
T  9276755 aaatgatcatttataatgctagaaagacatctatttacaataacaaatgcctttctaacactattaaacgatatttatagtcctagaatgatcatttgtg 9276854  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    || ||| || ||||| |||| |||||||||||||||||||| | ||||||||| ||||||||||||| |||| ||||||||    
T  9276855 atgattaaacgtaacgttttaacaccctggagcttttaaaaggtagcgttttgctccaagtcaacaacttaatggctacat 9276935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 39701152 - 39701339
Alignment:
Q  58 tcataaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-att 156  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||| |||    
T  39701152 tcataagtgatcatttataatgctagaaagacaattgtttacaacaataaatgcctttctagcactattaaacgacatttatagtgctagaatgataatt 39701251  T
Q  157 tgtgatcattgaatgtaacattttgacaccc-tggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacatta 243  Q
    |||||  ||| || ||||||||||||||||| | ||||||||||||  |||| ||||||||||||||||||| |||||| ||| ||||    
T  39701252 tgtgacgattaaacgtaacattttgacacccttagagcttttaaaagacagcattttgatccaagtcaacaacttaacgtctaaatta 39701339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 6236082 - 6235918
Alignment:
Q  78 tgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtgatcattgaatgtaaca 176  Q
    ||||||| || |||||||||||||||||||||| |||||||||||||||||| |||||||||| || || |||||| |||||||| |||| || ||||||    
T  6236082 tgctagataggcaactatttacaacaacaaatgcctttctagcactattaaatgacatttataatgctagaatgatcatttgtgaccattaaacgtaaca 6235983  T
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||  |||||||    
T  6235982 ttttgataccctagagcttttaaaatgcaacgttttgatccaagtcaacaacttaatagctacat 6235918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 23553729 - 23553543
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaa------acgacatttatagtgataaaatgat-a 154  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||      ||||  ||||||||| || |||||| |    
T  23553729 aaatgatcatttatagtgctagaaagacaactatttacaacaagaaatgtctttctagcactataaacatcaaacgatgtttatagtgctagaatgatca 23553630  T
Q  155 tttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||  ||| || ||||| |||||||||||||||||||||||||  |  |||||||||||||||||||||||||||||||||||    
T  23553629 tttgtgacgattaaacgtaacgttttgacaccctggagcttttaaaagacgacgttttgatccaagtcaacaatttaacggctacat 23553543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 93 - 227
Target Start/End: Complemental strand, 44041099 - 44040964
Alignment:
Q  93 tatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatga-tatttgtgatcattgaatgtaacattttgacaccctgga 191  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| | |||| ||||||||||||||||||| ||||    
T  44041099 tatttacagcaacaaatgtctttctagcactattaaacgacatttatagtgctagaatgactatttgtcaccattaaatgtaacattttgacaccttgga 44041000  T
Q  192 gcttttaaaatgcagcgttttgatccaagtcaacaa 227  Q
    |||||||||| ||| ||||||||| ||| |||||||    
T  44040999 gcttttaaaaggcaacgttttgatacaactcaacaa 44040964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 62 - 251
Target Start/End: Complemental strand, 25737470 - 25737282
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtga 161  Q
    ||||||| ||||||| ||| ||||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||| |||| |||| |||||||    
T  25737470 aaatgataatttatagtgccagaaagacaactatttacaccaacaaatacatttctagcactattaaacgacatttatagtgctaaattgatgtttgtga 25737371  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
     |||| ||  |||| ||||||||||| | | ||||||||||||| |||||| |||||| | ||||| ||||||| ||||| || ||||||    
T  25737370 ccattaaacttaacgttttgacaccc-gaaacttttaaaatgcatcgtttttatccaatttaacaacttaacggttacatcaacatcaat 25737282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 62 - 233
Target Start/End: Original strand, 16197300 - 16197472
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| || | | ||| ||||| |||||||||| |||||  ||||||||||||||||||||||||||||||| || |||||| |||||||    
T  16197300 aaatgatcatttatagtgattgcaaggcaactttttacaacaataaatgcatttctagcactattaaacgacatttatagtgctagaatgatcatttgtg 16197399  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaac 233  Q
    | |||| || ||||| |||||||||| || | ||||||||| ||| |||||||||| |||||||||| |||||    
T  16197400 accattaaacgtaacgttttgacaccttgaaacttttaaaaggcaacgttttgatctaagtcaacaacttaac 16197472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 4614108 - 4613932
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    |||||||||||||||||| | ||||||||  ||||| ||||||||||||  ||||||||||||||||| |||| || ||||| || |||||| |||||||    
T  4614108 aaatgatcatttataatgttggaaagacaggtatttgcaacaacaaatgcatttctagcactattaaatgacaattttagtgctagaatgatcatttgtg 4614009  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggct 237  Q
    |  ||| ||   ||| |||||||||| || | |||||||||||||   ||||||| ||||||||||| |||||||||    
T  4614008 acgattaaacacaacgttttgacaccttgtaacttttaaaatgcaatattttgattcaagtcaacaacttaacggct 4613932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 25729984 - 25729898
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaa 148  Q
    ||||||| ||||||| ||| ||||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||| ||||    
T  25729984 aaatgataatttatagtgccagaaagacaactatttacaccaacaaatacatttctagcactattaaacgacatttatagtgctaaa 25729898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 40553108 - 40553028
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagt 142  Q
    |||| |||||||||| || ||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  40553108 aaattatcatttatattgttagaaaggcaactatttacaacaacaaatgcctttctagcactattaaatgacatttgtagt 40553028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 14871210 - 14871109
Alignment:
Q  133 catttatagtgataaaatgat-atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaattta 231  Q
    |||| |||||| || |||||| |||||||| |||| || ||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||| |||    
T  14871210 cattcatagtgctagaatgatcatttgtgaccattaaacgtaacgttttgacaccctgaagcttttaaaatccaacgttttgatccaagtcaacaactta 14871111  T
Q  232 ac 233  Q
    ||    
T  14871110 ac 14871109  T

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Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 8714098 - 8714032
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacatta 243  Q
    |||||| |||||||||||||||||| | ||| ||||||| ||||||||||| |||||||||||||||    
T  8714098 ttttgataccctggagcttttaaaaagtagcattttgattcaagtcaacaacttaacggctacatta 8714032  T

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Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 40553105 - 40553202
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    |||||||| |||| || ||| | |||||||||||||||||||||||||  || | ||||||| ||||||||||| |||||||||| || || ||||||    
T  40553105 atttgtgaccattaaaggtagcgttttgacaccctggagcttttaaaagacaacattttgatacaagtcaacaacttaacggctatatcaacatcaat 40553202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 14871241 - 14871301
Alignment:
Q  181 gacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||||||| |||||| ||||||    
T  14871241 gacaccctgaagcttttaaaaggcatcgttttgatccaagtcaacaacttaacgactacat 14871301  T

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Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 30576404 - 30576340
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||||||  |||||||||||| ||| | ||||||| ||||||||||| |||||||||||||    
T  30576404 ttttgacacccccgagcttttaaaaggcaacattttgattcaagtcaacaacttaacggctacat 30576340  T

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Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 6236096 - 6236175
Alignment:
Q  155 tttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacg 234  Q
    ||||||| |||| || ||| ||||||||||||||| | | |||||||  ||||||||||||| |||||||||| ||||||    
T  6236096 tttgtgaccattaaacgtagcattttgacaccctgaaacatttaaaagacagcgttttgatctaagtcaacaacttaacg 6236175  T

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Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 23179238 - 23179160
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaa 232  Q
    ||||||||||||| || ||| | ||||||||| ||| |||||||||||  |||  ||||||||||||||||||| ||||    
T  23179238 atttgtgatcattaaacgtagcgttttgacactctgaagcttttaaaagacagtattttgatccaagtcaacaacttaa 23179160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 44041150 - 44041216
Alignment:
Q  159 tgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaac 225  Q
    |||||||| || ||| | ||||||||||||| ||||||||||| | ||| |||||||||||||||||    
T  44041150 tgatcattaaacgtagcgttttgacaccctgaagcttttaaaaggtagcattttgatccaagtcaac 44041216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 9276740 - 9276671
Alignment:
Q  172 taacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||| |||||||| ||| || ||||||||| ||| | ||||||||||||||||||| |||| ||||||||    
T  9276740 taacgttttgacatcctcgaacttttaaaaggcatcattttgatccaagtcaacaacttaaaggctacat 9276671  T

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Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 16197281 - 16197220
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggcta 238  Q
    |||||||||| || ||||||||||| |||   ||||||||||||||||||||||||| ||||    
T  16197281 ttttgacaccttgaagcttttaaaaggcaatattttgatccaagtcaacaatttaacagcta 16197220  T

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Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 5358954 - 5359014
Alignment:
Q  181 gacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||| ||||||||||||||| ||||| |||||||| |||||||||| ||||  |||||||    
T  5358954 gacactctggagcttttaaaaggcagctttttgatcaaagtcaacaacttaaaagctacat 5359014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 25730003 - 25730067
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||| ||||| |||||||||||||| | | | ||||||||||||||||||| |||||| ||||||    
T  25730003 tttttacaccatggagcttttaaaaggtaacattttgatccaagtcaacaacttaacgactacat 25730067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 25737489 - 25737553
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||| ||||| |||||||||||||| | | | ||||||||||||||||||| |||||| ||||||    
T  25737489 tttttacaccatggagcttttaaaaggtaacattttgatccaagtcaacaacttaacgactacat 25737553  T

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Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 5358859 - 5358918
Alignment:
Q  66 gatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactat 125  Q
    |||||||||||  |||| |||||||||| |||||||| | |||||||||||| |||||||    
T  5358859 gatcatttatacggctaaaaagacaactttttacaactagaaatgtctttctggcactat 5358918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 40553014 - 40552953
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggcta 238  Q
    |||||||| |||||||||||||||||  ||  |||||||| || | ||||||||||||||||    
T  40553014 ttttgacaacctggagcttttaaaatatagtattttgatcgaaattaacaatttaacggcta 40552953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 23553749 - 23553812
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||||||| ||||||||||||  || | ||||||||||||||||||| |||| | ||||||    
T  23553749 ttttgacaccctcgagcttttaaaa-acatcattttgatccaagtcaacaacttaaagactacat 23553812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 34686778 - 34686834
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaac 233  Q
    ||||||||||||| ||| ||||||||||| | ||||||||||| ||| ||| |||||    
T  34686778 ttttgacaccctgaagcatttaaaatgcaacattttgatccaaatcagcaacttaac 34686834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 39701136 - 39701073
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||| || |||||||||||| ||| | |||||||  |||||||||| |||||||||||||    
T  39701136 ttttgacacactcgagcttttaaaaggcaacattttgata-aagtcaacaacttaacggctacat 39701073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 34254775 - 34254946
Alignment:
Q  66 gatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtgatcat 165  Q
    |||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||| |||    
T  34254775 gatcatttctagtgctagaaagacaactatttacaacaacaaattactttctagcactattaaacgacatttatagtgccaaaatgatatttgtgaccat 34254874  T
Q  166 tgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggcta 238  Q
    | || ||||| |||||||| |||| |||||||||||  |||||||||||| ||||||||||| ||||||||||    
T  34254875 taaacgtaacgttttgaca-cctgaagcttttaaaagacagcgttttgatacaagtcaacaacttaacggcta 34254946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 67 - 241
Target Start/End: Original strand, 29418805 - 29418980
Alignment:
Q  67 atcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatga-tatttgtgatcat 165  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||  |||||| |||||||||||||||||||||||| || ||||| |||||||||| ||    
T  29418805 atcatttatagtgctagaaagacaattatttacaacagcaaatgcatttctatcactattaaacgacatttatagtgttataatgattatttgtgatgat 29418904  T
Q  166 tgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    | || ||||| | |||||||||||||| ||||||||  |||  ||||||||||||||||||| |||||||||||||    
T  29418905 taaacgtaacgtgttgacaccctggagtttttaaaagacagtattttgatccaagtcaacaacttaacggctacat 29418980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 8903134 - 8902950
Alignment:
Q  58 tcataaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-att 156  Q
    ||||||||||||||||||| | |||||||  ||||||||| |||||||||||||||||||| ||||||| |||||||| |||| || || |||||| | |    
T  8903134 tcataaatgatcatttatagtcctagaaaagcaactatttgcaacaacaaatgtctttctaacactattcaacgacatatataatgctagaatgatcact 8903035  T
Q  157 tgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||  ||| || ||||| |||||||||  |||||||||||||| ||| ||||||||||||||||||||| |||||||||||||    
T  8903034 tgtgacgattaaacgtaacgttttgacacggtggagcttttaaaaggcatcgttttgatccaagtcaacaacttaacggctacat 8902950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 10686565 - 10686385
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||  | |||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||| |||||||    
T  10686565 aaatgatcatttgcagtgctagaaagacaactgtttacaacaacaaatgtctttctagcacgattaaacggcatttatagtgctagaatgatcatttgtg 10686466  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| || ||||  |||||||||||  |||||||||||| |||   ||||||| ||||||||||| |||||||||||||    
T  10686465 acgattaaacgtaatgttttgacaccccagagcttttaaaaggcaatattttgatacaagtcaacaacttaacggctacat 10686385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 63 - 241
Target Start/End: Complemental strand, 4772460 - 4772282
Alignment:
Q  63 aatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtga 161  Q
    |||||||||||||| || ||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||| | || || |||||| ||||||||    
T  4772460 aatgatcatttatagtggtagaaagacaactattcgcaataacaaatgtctttctagcactattaaacaacatttacaatgctagaatgatcatttgtga 4772361  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
     |||| || ||||| |||||||| || | ||||||||||| |||| |||| ||||||||||||||| |||| || |||||    
T  4772360 ccattaaacgtaacgttttgaca-ccagaagcttttaaaaggcagagtttcgatccaagtcaacaacttaatggttacat 4772282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 49650844 - 49650962
Alignment:
Q  133 catttatagtgataaaatgatatttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaa 232  Q
    |||||||| || ||||||||||||||||| |||| || ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  49650844 catttataatgctaaaatgatatttgtgaccattaaacgtagcattttgacaccctggagattttaaaaggcagcgttttgatccaagtcaacaacttaa 49650943  T
Q  233 cggctacattaatatcaat 251  Q
    || |||||| || ||||||    
T  49650944 cgactacatcaacatcaat 49650962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 4030590 - 4030434
Alignment:
Q  83 gaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtgatcattgaatgtaacattttg 181  Q
    |||||||||||||||||||||| |||||  ||||||||||||||||||  ||||||||||| || |||||| ||| ||||  ||| || ||||| |||      
T  4030590 gaaagacaactatttacaacaaaaaatgcatttctagcactattaaacagcatttatagtggtagaatgatcattggtgacgattaaacgtaacgtttct 4030491  T
Q  182 acaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggcta 238  Q
    ||| | |||| ||||||||| |||| ||||||||| |||||||||| |||| |||||    
T  4030490 acatcatggaacttttaaaaggcagtgttttgatcaaagtcaacaacttaatggcta 4030434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 37663319 - 37663399
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtg 143  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| |||||  |||||||||||||||||| ||||||||||||    
T  37663319 aaatgatcatttatagtgctagaaagataactatttacaacaa-aaatgcatttctagcactattaaacaacatttatagtg 37663399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 48352547 - 48352466
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtg 143  Q
    ||||||||||||||| ||||||||| ||| || ||||||||| |||||| |||| |||||||||||||| ||||||||||||    
T  48352547 aaatgatcatttatagtgctagaaatacacctttttacaacaccaaatgcctttatagcactattaaacaacatttatagtg 48352466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 27351395 - 27351332
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactat 125  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  27351395 aaatgatcatttatagtgctagaaagacagctatttacaacaacaaatgcctttttagcactat 27351332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 49650839 - 49650754
Alignment:
Q  156 ttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||||| || ||| | ||||||||||||| | |||||||||  || | ||||||||||| ||||||| |||||||||||||    
T  49650839 ttgtgatcattaaacgtatcgttttgacaccctgaaacttttaaaagacaacattttgatccaaatcaacaacttaacggctacat 49650754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 27351392 - 27351479
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||| |||| ||  || ||||| |||||||| ||||||||||||  || | |||||||| |||||||||| |||||||||||||    
T  27351392 atttgtgaccattaaaattagcatttcgacaccctagagcttttaaaaaacaacattttgatcaaagtcaacaacttaacggctacat 27351479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 39302541 - 39302454
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||| |||| || ||| | ||||||||||||| ||||||||||| ||| | |||||||||| || |||||||| |||| |||||    
T  39302541 atttgtgaccattaaacgtagcgttttgacaccctgaagcttttaaaaggcaacattttgatccacgttaacaatttcacggttacat 39302454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 8903150 - 8903210
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggct 237  Q
    |||| ||||||| || ||||||||| ||| | ||||||||||||| |||||||||||||||    
T  8903150 tttttacaccctcgaacttttaaaaggcaccattttgatccaagttaacaatttaacggct 8903210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 34254751 - 34254701
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaa 227  Q
    |||| ||||| || ||||||||||| ||||| |||||||||||||||||||    
T  34254751 ttttaacaccatgaagcttttaaaaggcagcattttgatccaagtcaacaa 34254701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 37663322 - 37663236
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctaca 240  Q
    |||||||| |||| || ||| ||||||| |||| | ||||||||||||  || | |||||||||||| |||||| ||| ||||||||    
T  37663322 atttgtgaccattaaacgtagcattttgtcaccttcgagcttttaaaagacaacattttgatccaagacaacaacttatcggctaca 37663236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 27351330 - 27351257
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaa 227  Q
    ||||||||  ||| || ||||| ||||||||||||| | ||||||||| ||| | ||||||| |||||||||||    
T  27351330 atttgtgacgattaaacgtaacgttttgacaccctgtatcttttaaaaggcaacattttgattcaagtcaacaa 27351257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 48352442 - 48352389
Alignment:
Q  188 tggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||||||||||||    ||| |||||||||||||| |||||||||||||    
T  48352442 tggagcttttaaaatgcattagtttaatccaagtcaacaacttaacggctacat 48352389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 4772517 - 4772589
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatca 249  Q
    ||||||||||||  ||||||||||| ||| | |||||||| || ||||||| || || ||||||| |||||||    
T  4772517 ttttgacaccctcaagcttttaaaaggcaacattttgatctaaatcaacaacttcacagctacatcaatatca 4772589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 9658 - 9837
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| || | |||||||||||||||||||||||||||||||||  | ||||||||||||||||||||| || || |||||| |||||||    
T  9658 aaatgatcatttatagtgtt-gaaagacaactatttacaacaacaaatgtcttttcaacactattaaacgacatttataatgctagaatgatcatttgtg 9756  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||    
T  9757 acgattaaatgtaacgttttgacaccctggagcttttaaaagacagcgttttgatccaagtcaacaatgtaacgactacat 9837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 9661 - 9582
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaac 233  Q
    |||||||| |||| || ||| | |||||||||||| |||||||||||| |||   |||||||| |||||||||| |||||    
T  9661 atttgtgaccattaaacgtagcgttttgacaccctcgagcttttaaaaggcaatattttgatcaaagtcaacaacttaac 9582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 17179992 - 17179813
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||    
T  17179992 aaatgatcatttatagtgctagaaagacaactatttaccacaacaaatgtctttctagcactattaaacgacatttatagtgctagaatgatcatttgtg 17179893  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    | |||| |  ||||| ||||||||||||||||||||||||| | | |  ||||||| |||||||||| |||||| ||||||    
T  17179892 accattaagcgtaacgttttgacaccctggagcttttaaaaggtaac-atttgatctaagtcaacaacttaacgactacat 17179813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 67 - 241
Target Start/End: Original strand, 17131979 - 17132153
Alignment:
Q  67 atcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtgatcat 165  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||||| | |||    
T  17131979 atcaattatagtgctagaaaggcaactatttacaacaacaaatgtctttctagcactattaaacgacatttacagtgctagaatgatcatttgtaaccat 17132078  T
Q  166 tgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    | ||||||| |||||||||||||||| ||||||||| |||  | ||||||||| |||||||||||||||| |||||    
T  17132079 taaatgtaatattttgacaccctggaacttttaaaaggcaatg-tttgatccaggtcaacaatttaacggttacat 17132153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 9902267 - 9902090
Alignment:
Q  63 aatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtga 161  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||| || ||||||  |||||||    
T  9902267 aatgatcatttatagtgctagaaagacagctatttacaacaataaatgcctttctatcactattaaacgacatttatagtgctagaatgatcgtttgtga 9902168  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctac 239  Q
      ||| || ||||| |||| ||||  || ||||||||||| ||||||||||||||||||||||||| |||| ||||||    
T  9902167 cgattaaacgtaacgttttaacactttgaagcttttaaaaggcagcgttttgatccaagtcaacaacttaatggctac 9902090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 227
Target Start/End: Original strand, 11527800 - 11527966
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgat-aaaatgatatttgtg 160  Q
    ||||||| ||||||| ||||| |||| |||||||||||||||  ||||||||||||| ||| ||| |||||||||||||||| | |||||||||||||||    
T  11527800 aaatgataatttatagtgctataaaggcaactatttacaacataaaatgtctttctaacacaattgaacgacatttatagtggtaaaaatgatatttgtg 11527899  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaa 227  Q
    | |||| ||  |||| ||||||||||||||| |||||||||  ||| ||||||||||||||||||||    
T  11527900 accattaaacataacgttttgacaccctggaacttttaaaagacagtgttttgatccaagtcaacaa 11527966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 24139358 - 24139179
Alignment:
Q  64 atgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtgat 162  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||| ||| ||||||||| ||||||||     
T  24139358 atgattatttataatgctagaaagacatctatttacaacaacaaatgtctttctagcactattaaatagcatttatggtgctaaaatgataatttgtgac 24139259  T
Q  163 cattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaa-tttaacggctacat 241  Q
    |||| ||  |||| |||| | | ||| || |||||||||| || |||||||||| |||||||||| |||||| |||||||    
T  24139258 cattaaacataacgttttaatatcctagaacttttaaaatacaacgttttgatctaagtcaacaactttaacagctacat 24139179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 232
Target Start/End: Complemental strand, 28630477 - 28630318
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtga 161  Q
    |||||||||||||||| | |||||||  | ||||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||    
T  28630477 aaatgatcatttataacgttagaaaggtagctatttacaacaacaaatgtctttctagcactattaaacaacatttatagt--------gatatttgtga 28630386  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaa 232  Q
     |||| || ||||||||||||||||| | |||||||||||   | | |||| |||||||||||||| ||||    
T  28630385 ccattaaacgtaacattttgacaccccgaagcttttaaaa---aacattttaatccaagtcaacaacttaa 28630318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 10963011 - 10963108
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    |||||||||||| || ||||||||||||||||||||||||||||   ||||||||| || |||||||||||||||||||||| || |||||| |||||||    
T  10963011 aaatgatcatttgtagtgctagaaagacaactatttacaacaac---tgtctttcttgctctattaaacgacatttatagtgctagaatgatcatttgtg 10963107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 17131773 - 17131701
Alignment:
Q  178 tttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||||    
T  17131773 tttgacaccctggaacttttaaaatgcaacgttt-gatccaagtcaacaatttaacggttacatcaacatcaat 17131701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 2839937 - 2840006
Alignment:
Q  182 acaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    |||||||| |||||||||||  |||||||||||||||| ||||| | ||||||||||||| |||||||||    
T  2839937 acaccctgaagcttttaaaaaacagcgttttgatccaaatcaaccacttaacggctacatcaatatcaat 2840006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 28630497 - 28630561
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||||||| | ||||||||| ||||| ||||||||||||||||||| |||||| ||||||    
T  28630497 ttttgacaccctgtaacttttaaaaggcagcattttgatccaagtcaacaacttaacgactacat 28630561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 10963014 - 10962927
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||| |||| || ||| | |||||||| |||  |||||||||||  |||| ||||||||||||||||||| |||||||||||||    
T  10963014 atttgtgaccattaaacgtagcgttttgacatcctaaagcttttaaaaaacagcattttgatccaagtcaacaacttaacggctacat 10962927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 9946586 - 9946647
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggcta 238  Q
    ||||||||||||| ||||||||||||||| | || |||||||||| ||||| ||||||||||    
T  9946586 ttttgacaccctgaagcttttaaaatgcaacattctgatccaagttaacaacttaacggcta 9946647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 24139388 - 24139443
Alignment:
Q  186 cctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||| ||||||||||||| || |||||||||||||||||||| |||| ||||||||    
T  24139388 cctgaagcttttaaaatgtagtgttttgatccaagtcaacaacttaatggctacat 24139443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 17180012 - 17180076
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||||| | ||| |||||||| ||||| ||||||| ||||||||||| |||||| ||||||    
T  17180012 ttttgacaccatcgagtttttaaaaggcagcattttgattcaagtcaacaacttaacgactacat 17180076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 31247495 - 31247315
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||||     
T  31247495 aaatgatcaattatagtgctagaaaggcagctatttacaacaacaaatgtctttctagcactattaaacgacatttacagtgctagaatgatcatttgta 31247396  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    | |||| || |||| ||||||||||| |||| |||||||||  || ||||||||||||||||||||| |||||||||||||    
T  31247395 accattaaacgtaatattttgacaccatggaacttttaaaagacaacgttttgatccaagtcaacaacttaacggctacat 31247315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 53783148 - 53783328
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||| || |||||| |||||||    
T  53783148 aaatgatcatttatagtgctagaaagacaactatttacaactacaaatatctttctaacactattaaacaacatttatagtgctagaatgatcatttgtg 53783247  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| || |||| ||||||||||| ||||||||||||||||||| ||||||||| || ||||||| |||||| ||||||    
T  53783248 actattaaacgtaatattttgacaccttggagcttttaaaatgcagtgttttgatctaaatcaacaacttaacgactacat 53783328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 3087408 - 3087228
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| ||||||||||  | ||||||||||||||||||||||||||||||||||||||  |||||||||||| || || ||| |||| ||    
T  3087408 aaatgatcatttatagtgctagaaaggtagctatttacaacaacaaatgtctttctagcactattaaataacatttatagtgttagaacgatcatttatg 3087309  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    | |||| || ||||| |||||||||| | ||| |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  3087308 accattaaacgtaacgttttgacacctttgagattttaaaatgcagcgttttgatccaagtcaacaacttaaaggctacat 3087228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 62 - 201
Target Start/End: Original strand, 4276409 - 4276548
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||||||| || || |||||| |||||||    
T  4276409 aaataatcatttatagtgctagaaagacagctatttacaacaacaaatg-cttcctagcactattaaacaacatttataatgctagaatgatcatttgtg 4276507  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaa 201  Q
    |  ||| ||  |||| |||||||||| || | |||||||||    
T  4276508 acgattaaacataacgttttgacaccttgaaacttttaaaa 4276548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 35555831 - 35555918
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||||||| || ||| | |||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||||    
T  35555831 atttgtgatcattaaacgtagcgttttgacacccttgagcttttaaaatgaagcattttgatccaagtcaacaacttaacggctacat 35555918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 14629474 - 14629404
Alignment:
Q  171 gtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  14629474 gtaacattttgacaccctagagcttttaaaaggcagcgttttgattcaaatcaacaacttaacggctacat 14629404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 24707684 - 24707586
Alignment:
Q  153 tatttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    ||||||||| |||| |||||| | |||||||||||| |||||||| ||| ||| | |||||||| || ||||||||||||||||||||| || ||||||    
T  24707684 tatttgtgaccattaaatgtagcgttttgacaccctcgagctttttaaaggcaacattttgatctaaatcaacaatttaacggctacatcaacatcaat 24707586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 14629540 - 14629604
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||||||| |||||||||||| ||||| |||||||||||||||| || |||||||||||||    
T  14629540 ttttgacaccctcgagcttttaaaaggcagcattttgatccaagtcaataacttaacggctacat 14629604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 53783151 - 53783071
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacg 234  Q
    |||||||| |||| || ||| | |||||||||||| |  ||||||||||||||| ||||||||||| ||||||| ||||||    
T  53783151 atttgtgaccattaaacgtagcgttttgacaccctcggtcttttaaaatgcagcattttgatccaaatcaacaacttaacg 53783071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 4276388 - 4276324
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||||||| |||||||||||| ||| | |||||||| || ||||||| ||||| |||||||    
T  4276388 ttttgacaccctcgagcttttaaaaggcaccattttgatctaaatcaacaacttaaccgctacat 4276324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 21376842 - 21376755
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||| |||| || ||| | |||||||||| | ||||||||||||  || | |||| || ||||||||||| |||||||||||||    
T  21376842 atttgtgaccattaaacgtagcgttttgacaccatcgagcttttaaaagacaacattttaattcaagtcaacaacttaacggctacat 21376755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 35555827 - 35555719
Alignment:
Q  133 catttatagtgataaaatgat-atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaat--gcagcgttttgatccaagtcaacaatt 229  Q
    ||||||||||| || ||| || ||||||||  ||| || ||||| |||| ||||||||||| ||||||||   | |||||||||||| |||||| ||| |    
T  35555827 catttatagtgctagaataatcatttgtgactattaaacgtaacgttttaacaccctggagtttttaaaagaggaagcgttttgatctaagtcagcaact 35555728  T
Q  230 taacggcta 238  Q
    |||||||||    
T  35555727 taacggcta 35555719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 21376846 - 21376946
Alignment:
Q  133 catttatagtgataaaatgat-atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaattta 231  Q
    ||||||||||| || |||||| ||||||||  ||| ||  || | ||||| |||||| ||||||||||||  || |||||||||||||| |||||| |||    
T  21376846 catttatagtgctagaatgatcatttgtgacgattaaacatatcgttttggcaccctagagcttttaaaagacaacgttttgatccaagacaacaactta 21376945  T
Q  232 a 232  Q
    |    
T  21376946 a 21376946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 28816 - 29004
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtga 161  Q
    ||||| ||||||||| | ||||||||||| |||||||||||||||||||  |||  |||||||||||||||||||||||||| ||||||||| |||||||    
T  28816 aaatggtcatttatagtactagaaagacagctatttacaacaacaaatgcattttgagcactattaaacgacatttatagtgctaaaatgatgtttgtga 28915  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    ||||| || ||||| ||||||||||| | ||||||||||| ||| ||||||||||||| ||||||| ||||| ||||||| || ||||||    
T  28916 tcattaaacgtaacgttttgacaccc-gaagcttttaaaaggcatcgttttgatccaaatcaacaacttaaccgctacatcaacatcaat 29004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 28797 - 28733
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||| ||||| | |||||||||||| ||| | || |||||||||||||||| |||| ||||||||    
T  28797 tttttacaccattgagcttttaaaaggcaacattgtgatccaagtcaacaacttaatggctacat 28733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 11871506 - 11871686
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| || |||||| |||||||    
T  11871506 aaatgatcatttatagtgctagaaatacagctatttacaacaacaaatgtttttctaccactattaaacgacatttatagtgctagaatgatcatttgtg 11871605  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| || ||||| ||||||||||||| |||||||||||  || | |||||||| ||||||||||||||||| ||||||    
T  11871606 acgattaaacgtaacgttttgacaccctgaagcttttaaaagccaccattttgatcaaagtcaacaatttaacgactacat 11871686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 15506256 - 15506440
Alignment:
Q  58 tcataaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-att 156  Q
    ||||||||||||||| ||| |||||||||||||  ||||||||||||||||||| ||||| ||||||||||||| ||||||||||| || |||||| |||    
T  15506256 tcataaatgatcattcatagtgctagaaagacagttatttacaacaacaaatgtttttcttgcactattaaacggcatttatagtgctagaatgatcatt 15506355  T
Q  157 tgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||  ||| || |||| ||||||||||||||||| ||||||||   || ||||||||| ||||||||||||||||||||||||    
T  15506356 tgtgacaattaaacgtaatattttgacaccctggagattttaaaacatagtgttttgatcaaagtcaacaatttaacggctacat 15506440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 20535811 - 20535631
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||| || || |||| | |||||||    
T  20535811 aaataatcatttatagtgcgagaaagacaactatttacaacaacaaatgtctttctaacactattaaaatgcatttataatgctagaatggtcatttgtg 20535712  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| || |||||||||||||||  | |||||||||||| ||| ||||||||||||||||||||| |||||||||||||    
T  20535711 acgattaaacgtaacattttgacacttttgagcttttaaaaggcaacgttttgatccaagtcaacaacttaacggctacat 20535631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 19080901 - 19081057
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |||||| | | |||    
T  19080901 aaatgatcatttatagtgctagaaagacaactatttacaacaacaaatgtctttctaccactattaaacgtcatttatagtgttagaatgatcagtcgtg 19081000  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaa 219  Q
    |  ||| |||||||| ||||||||||||| ||  ||| ||| ||| |||||||||||||    
T  19081001 acgattaaatgtaacgttttgacaccctgcag--ttttaaaggcaacgttttgatccaa 19081057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 62 - 216
Target Start/End: Complemental strand, 27893412 - 27893257
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  || |||||| |||||||    
T  27893412 aaatgatcatttattgtgctagaaagacaactatttacaacaacaaacgtctttctagcactattaaacgacatttataattctagaatgatcatttgtg 27893313  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatc 216  Q
    |  ||| || ||||| |  | |||||||||||||||||||  ||| ||||||||||    
T  27893312 acgattaaacgtaacgtcctaacaccctggagcttttaaatggcaacgttttgatc 27893257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 39301590 - 39301759
Alignment:
Q  64 atgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtgat 162  Q
    ||||| ||||||| ||||||||||| |  |||||||||||||||||   ||||||||||||||||||||||||||||||| || |||||| |||| |||     
T  39301590 atgattatttatagtgctagaaagatagttatttacaacaacaaatacttttctagcactattaaacgacatttatagtgttagaatgatcatttctgac 39301689  T
Q  163 cattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaa 232  Q
     ||| || ||||  |||||||||| ||||||||||||||  || ||||||||||||||||| ||||||||    
T  39301690 aattaaacgtaaagttttgacaccatggagcttttaaaagacaacgttttgatccaagtcaccaatttaa 39301759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 36196355 - 36196264
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat 153  Q
    ||||||||||||||| |||||||| |||| ||||| ||||||||| |||||||| ||||||||||||| |||||||| |||| || ||||||    
T  36196355 aaatgatcatttatagtgctagaaggacagctattaacaacaacagatgtctttttagcactattaaatgacatttaaagtgctagaatgat 36196264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 36196352 - 36196436
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggcta 238  Q
    |||||||| |||| || ||| | |||||||||||| ||| |||||||| ||||| ||||||||||||||||||| ||||||||||    
T  36196352 atttgtgaccattaaacgtagcgttttgacaccctcgagtttttaaaaggcagcattttgatccaagtcaacaacttaacggcta 36196436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 19080904 - 19080807
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    ||||||||||||| ||  || |||||||||||||| ||||||||||||  |||  |||||||||| |||||||| ||||||| ||||| || ||||||    
T  19080904 atttgtgatcattaaacatagcattttgacaccctcgagcttttaaaagacagtattttgatccatgtcaacaacttaacggttacatcaacatcaat 19080807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 27893409 - 27893496
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||| ||||  | ||| |||||||||| ||| || ||||||||  ||| | |||||||||||||||||||||||||||||||||    
T  27893409 atttgtgaccattacacgtagcattttgacatcctcgaccttttaaatggcaacattttgatccaagtcaacaatttaacggctacat 27893496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 20535831 - 20535895
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||| ||||||| |||||||||||| ||  | |||||||||||||||| || |||||||||||||    
T  20535831 ttttaacaccctcgagcttttaaaaggctacattttgatccaagtcaataacttaacggctacat 20535895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 42117065 - 42117002
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactat 125  Q
    |||| ||||||||||  ||||||||| || ||||| ||||||| ||||||||||||||| ||||    
T  42117065 aaataatcatttatagggctagaaaggcagctattgacaacaaaaaatgtctttctagccctat 42117002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 27893252 - 27893214
Alignment:
Q  203 gcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  27893252 gcagcgttttgatctaagtcaacaacttaacggctacat 27893214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 62 - 251
Target Start/End: Complemental strand, 52568050 - 52567862
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtga 161  Q
    ||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||    
T  52568050 aaatgatcatttatagtgatagaaagacaaccatttacaacaataaatgtctttctagcactattgaacgatatttatagtgctaaaatgatatttgtga 52567951  T
Q  162 tcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
     |||| ||  |||| ||||||||||||| || ||||||||  || | |||||||||||| ||| || |||||| |||||| || ||||||    
T  52567950 ccatt-aacataacgttttgacaccctgaagtttttaaaagacaacattttgatccaagacaataacttaacgactacatcaacatcaat 52567862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 52866119 - 52866298
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| || |||||| |||||||    
T  52866119 aaatgatcatttatagtgctggaaagacaattatttacaacaacaaatgtcgttctaacactattaaacgacatttatagtgctagaatgatcatttgtg 52866218  T
Q  161 atcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |  ||| ||  |||  ||||||||||||||||||||||||| | | ||||||||||||||| ||||| ||||||| |||||    
T  52866219 acgatt-aaactaatgttttgacaccctggagcttttaaaaagaaacgttttgatccaagtgaacaacttaacgggtacat 52866298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 93 - 251
Target Start/End: Original strand, 30542924 - 30543082
Alignment:
Q  93 tatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtgatcattgaatgtaacattttgacaccctggag 192  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||| || |||| || ||||  |||||||||| || ||    
T  30542924 tatttacaacaacaaatgtctttctagcattattaaacgatatttatagtgttaaaatgatatttgcgaccattaaacgtaatgttttgacaccatgaag 30543023  T
Q  193 cttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    |||||||||  || |||||||||  |||||||||||||||| ||| ||  |||||||||    
T  30543024 cttttaaaagtcaacgttttgatttaagtcaacaatttaacagctccaacaatatcaat 30543082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 19681461 - 19681542
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtg 143  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  19681461 aaatgatcatttatagtgctagaaagacaactatttacaacaacaaatgcctttctagcactcttaaacgacatttatagtg 19681542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 31229619 - 31229491
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtg 160  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||  ||||||||| ||||||||||||||||||||| || |||||| |||||||    
T  31229619 aaatgatcatttatagtgctagaaagacaactatttacaacaataaatgcatttctagcattattaaacgacatttatagtgctagaatgatcatttgtg 31229520  T
Q  161 atcattgaatgtaacattttgacaccctg 189  Q
    |  ||| || ||||| ||||| |||||||    
T  31229519 acgattaaacgtaacgttttgccaccctg 31229491  T

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Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 5387392 - 5387556
Alignment:
Q  78 tgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgat-atttgtgatcattgaatgtaaca 176  Q
    |||||||||  ||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||| |||| | |  ||| ||||||||     
T  5387392 tgctagaaaagcaactatttacaacaacaaatatctttctatcactattaaacgacatttacagtgatagaatgatcatttataactattaaatgtaact 5387491  T
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||   || ||||||||||| | |||| |||||| ||| |||||||||||| | ||||||    
T  5387492 ttttgacatattgaagcttttaaaaggaagcgatttgatacaaatcaacaatttaaagactacat 5387556  T

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Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 8408707 - 8408532
Alignment:
Q  68 tcatttataatgctagaaagacaactatttacaacaacaaatgtctttctag--cactattaaacgacatttatagtgataaaatgat-atttgtgatca 164  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||| |  ||| |||||| ||||||||||||| || |||||| |||||||| ||    
T  8408707 tcatttataatgctagaaagacagttatttacaacaacaaatatctttcttgcacacaattaaatgacatttatagtgctagaatgatcatttgtgacca 8408608  T
Q  165 ttgaatgtaacattttgacacc-ctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctac 239  Q
    || ||  |||| ||||||||||  || ||||| ||||| ||| | ||||||| ||||||||||| |||| ||||||    
T  8408607 ttaaacataacgttttgacacctttgaagcttgtaaaaggcaacattttgattcaagtcaacaacttaaaggctac 8408532  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 19632098 - 19632021
Alignment:
Q  62 aaatgatcatttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttat 139  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||| | ||||||||||| |||||    
T  19632098 aaatgatcatttatagtgctagaaagacatatatttacaacaacaaatgcctttctagtattattaaacgacgtttat 19632021  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 52181991 - 52181894
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
    |||||||| |||| || ||| | ||||||||||||||||||||||||| ||| | |||||||| |||||||||| |||||| |||||| || ||||||    
T  52181991 atttgtgaccattaaacgtagcgttttgacaccctggagcttttaaaaggcaacattttgatcaaagtcaacaacttaacgactacatcaacatcaat 52181894  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 19681464 - 19681377
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||| |||| || ||||| |||||||| ||| ||||||||||||  || | || |||||||||||||||| |||||||||||||    
T  19681464 atttgtgaccattaaacgtaacgttttgacatcctcgagcttttaaaagacaacattatgatccaagtcaacaacttaacggctacat 19681377  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 19632118 - 19632182
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||| || |||||||||||||| | | ||||||||| ||||||||| |||||||||||||    
T  19632118 ttttgacactcttgagcttttaaaatgtaacattttgatcctagtcaacaacttaacggctacat 19632182  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 52568047 - 52568118
Alignment:
Q  154 atttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaac 225  Q
    |||||||| |||| || ||| | |||||||||||| |||||||||||| ||| | |||||||||||||||||    
T  52568047 atttgtgaccattaaacgtagcgttttgacaccctagagcttttaaaacgcatcattttgatccaagtcaac 52568118  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 30542897 - 30542809
Alignment:
Q  153 tatttgtgatcattgaatgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||||||||| || ||| | |||||||||||| ||| ||||||||| || | |||| ||| |||| ||||| ||||||| |||||    
T  30542897 tatttgtgatcattaaacgtagcgttttgacaccctagagtttttaaaatacaacattttaatctaagttaacaacttaacggttacat 30542809  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 31229639 - 31229703
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||||||||||| |||||||| ||| | ||| ||||||| ||||||||||| |||||| ||||||    
T  31229639 ttttgacaccctcgagcttttgaaaggaagcattttgattcaagtcaacaacttaacgactacat 31229703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 52182046 - 52182103
Alignment:
Q  184 accctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    ||||||||||||||||||  || | |||||||  |||||||||| |||||||||||||    
T  52182046 accctggagcttttaaaagacatcattttgatttaagtcaacaacttaacggctacat 52182103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 251
Target Start/End: Complemental strand, 379 - 199
Alignment:
Q  70 atttataatgctagaaagacaactatttacaacaacaaatgtctttctagcactattaaacgacatttatagtgataaaatgatatttgtgatcattgaa 169  Q
    ||||||| ||||||||||||| ||||||||||| |||||||  |||  |||||||||||||||||||||||||| ||||||||| ||||||| |||| ||    
T  379 atttatagtgctagaaagacagctatttacaaccacaaatgcattttgagcactattaaacgacatttatagtgctaaaatgatgtttgtgaccattaaa 280  T
Q  170 tgtaacattttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacattaatatcaat 251  Q
     ||||| ||||||||||| | ||||||||||| ||| || |||||||||  ||||||| ||||| | ||||| || ||||||    
T  279 cgtaacgttttgacaccc-gaagcttttaaaaggcatcgctttgatccacatcaacaacttaaccgttacatcaacatcaat 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 406 - 470
Alignment:
Q  177 ttttgacaccctggagcttttaaaatgcagcgttttgatccaagtcaacaatttaacggctacat 241  Q
    |||| ||||| |||||||||||||| ||| | || |||||||||||||||| |||||||||||||    
T  406 tttttacaccatggagcttttaaaaggcaacattgtgatccaagtcaacaacttaacggctacat 470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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