View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0361_high_6 (Length: 369)

Name: NF0361_high_6
Description: NF0361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0361_high_6
NF0361_high_6
[»] chr8 (1 HSPs)
chr8 (1-361)||(29711904-29712265)
[»] chr4 (2 HSPs)
chr4 (9-361)||(55807776-55808134)
chr4 (8-361)||(55803188-55803547)
[»] chr7 (8 HSPs)
chr7 (1-152)||(8490238-8490386)
chr7 (1-152)||(8517043-8517189)
chr7 (18-152)||(8485243-8485374)
chr7 (5-152)||(1525514-1525658)
chr7 (221-361)||(8490020-8490160)
chr7 (221-361)||(8516825-8516965)
chr7 (221-361)||(8485024-8485165)
chr7 (299-348)||(1525814-1525863)
[»] chr5 (3 HSPs)
chr5 (1-191)||(15166592-15166779)
chr5 (1-152)||(15170848-15170998)
chr5 (221-359)||(15171070-15171208)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 29711904 - 29712265
Alignment:
Q  1 ggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  29711904 ggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttctaatgtt 29712003  T
Q  101 ggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatctattnnnnnnn-gagcttgatcttgttccttcacaaatgtgtgtgctcct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||||||||||||||||||||||    
T  29712004 ggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatctaataaaaaaaagagcttgatcttgttccttcacaaatgtgtgtgctcct 29712103  T
Q  200 aaaactttgcgccctatcagaagatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgagg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712104 aaaactttgcgccctatcagaagatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgagg 29712203  T
Q  300 tgggcttctaaccttcatactattttttccctttattataatattttccttctccctatgat 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29712204 tgggcttctaaccttcatactattttttccctttattataatattttccttctccttatgat 29712265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 55808134 - 55807776
Alignment:
Q  9 gattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaattttggaaagtg 108  Q
    ||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  55808134 gattataagaattaaattttggtttaatatttatgcgtgtataaagcatgacatattggtctcatgtatgtataggcgtattttctaatgttggaaagtg 55808035  T
Q  109 ggtccaccacatatttgcaatttggattggacttgctgaatctattnnnnnnngagcttgatcttgttccttcacaaatgtgt------gtgctcctaaa 202  Q
    |||||||||||||||||||||||| ||||||||||||| ||||| |       ||||||| ||||||||||||||||| ||||      || ||||||||    
T  55808034 ggtccaccacatatttgcaatttgaattggacttgctggatctaataaaaaaagagcttggtcttgttccttcacaaacgtgtcttgatgtactcctaaa 55807935  T
Q  203 actttgcgccctatcagaagatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgg 302  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  ||||||  |||| | ||||||||||||||||||||    
T  55807934 actttgtgccctatcagaagatttgaataatgctaatttggtttggagagaatatgcatctgccaaatgtttgtatactacatttagctacttgaggtgg 55807835  T
Q  303 gcttctaaccttcatactattttttccctttattataatattttccttctccctatgat 361  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  55807834 gcttctaaccttcatgctattttttccctttattataatattttccttctccttatgat 55807776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 55803547 - 55803188
Alignment:
Q  8 cgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaattttggaaagt 107  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| |    
T  55803547 cgattataagaattaaattttggtttaatatttctgcgtgtatgaagcgtgacatattggtctcatgtatgtataggcgtattttctaatgttggaaatt 55803448  T
Q  108 gggtccaccacatatttgcaatttggattggacttgctgaatctattnnnnnnngagcttgatcttgttccttcacaaatgtgt------gtgctcctaa 201  Q
     |||||||||||||||||||||||||||||||||||||  ||||| |       ||||||| ||||||||||||||||| ||||      || |||||||    
T  55803447 aggtccaccacatatttgcaatttggattggacttgctcgatctaataaaaaaagagcttggtcttgttccttcacaaacgtgtcttgatgtactcctaa 55803348  T
Q  202 aactttgcgccctatcagaagatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtg 301  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||  ||||||  |||| | |||||||||||||||||||    
T  55803347 aactttgtgccctatcagaagatttgaataatgctaatttggtttggagagaatttgcatctgccaaatgtttgtatactacatttagctacttgaggtg 55803248  T
Q  302 ggcttctaaccttcatactattttttccctttattataatattttccttctccctatgat 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55803247 ggcttctaaccttcatactattttttccctttattataatattttccttctccttatgat 55803188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 8490386 - 8490238
Alignment:
Q  1 ggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaatttt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| | || || ||||||    
T  8490386 ggattcacgattataagaattaaattttggtttaatatttctgcctctatgaagcatgacatattggtctcatgtatgtataggccttttatctaatttt 8490287  T
Q  101 ggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta 152  Q
      ||  |||||   ||||| |||||||||||||||||||||||||| |||||    
T  8490286 taaacatgggt---ccacacatttgcaatttggattggacttgctggatcta 8490238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 8517189 - 8517043
Alignment:
Q  1 ggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaatttt 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||   | |||||||||||||||||||||||||||||||||||| | || || ||||||    
T  8517189 ggattcacgattataagaattaaattttggtttaatatttctgc--ctctgaagcatgacatattggtctcatgtatgtataggccttttatctaatttt 8517092  T
Q  101 ggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta 152  Q
      ||  |||||   ||||| |||||||||||||||||||||||||| |||||    
T  8517091 taaacatgggt---ccacacatttgcaatttggattggacttgctggatcta 8517043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 8485374 - 8485243
Alignment:
Q  18 aattaaattttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccacca 117  Q
    |||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| | || || ||||||  ||  |||||   |||    
T  8485374 aattaaattttggtttaatatttctgcctctatgaagcatgacatattggtctcatgtatgtataggccttttatctaatttttaaacatgggt---cca 8485278  T
Q  118 catatttgcaatttggattggacttgctgaatcta 152  Q
    || |||||||||||||||||||||||||| |||||    
T  8485277 cacatttgcaatttggattggacttgctggatcta 8485243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 1525514 - 1525658
Alignment:
Q  5 tcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacata-ttggtctcatgtatgtataggcgtattttccaattttgga 103  Q
    ||||||||||||||||||||||||| ||||||| ||||  |||||| |||||||| ||| |||||||||||||||| |||| ||||| |||||||||||     
T  1525514 tcacgattataagaattaaattttggtttaata-ttctatgtgtataaagcatgatatatttggtctcatgtatgtttaggtgtattatccaattttggt 1525612  T
Q  104 aagtgggtccaccacatatttgcaatttggattggacttgctgaatcta 152  Q
    |  |||||   ||||| ||||||||||||||||||||||| || |||||    
T  1525613 atatgggt---ccacacatttgcaatttggattggacttgttggatcta 1525658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 361
Target Start/End: Complemental strand, 8490160 - 8490020
Alignment:
Q  221 agatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcatact 320  Q
    |||||||||| | |||||||||||||||| |||||||||||| |||| || | ||||| | | |  | |||||| ||||||||||||||||||| ||| |    
T  8490160 agatttgaataaagctaatttggtttggaaagaatatgcattggctggatatccttatggagaagattgctactggaggtgggcttctaacctttatatt 8490061  T
Q  321 attttttccctttattataatattttccttctccctatgat 361  Q
    || |||||||||| | |||||||||||||||||| ||||||    
T  8490060 atattttccctttctcataatattttccttctccttatgat 8490020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 361
Target Start/End: Complemental strand, 8516965 - 8516825
Alignment:
Q  221 agatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcatact 320  Q
    |||||||||| | |||||||||||||||| |||||||||||| |||| || | ||||| | | |  | |||||| ||||||||||||||||||| ||| |    
T  8516965 agatttgaataaagctaatttggtttggaaagaatatgcattggctggatatccttatggagaagattgctactggaggtgggcttctaacctttatatt 8516866  T
Q  321 attttttccctttattataatattttccttctccctatgat 361  Q
    || |||||||||| | |||||||||||||||||| ||||||    
T  8516865 atattttccctttctcataatattttccttctccttatgat 8516825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 361
Target Start/End: Complemental strand, 8485165 - 8485024
Alignment:
Q  221 agatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcata-c 319  Q
    |||||||||| | |||||||||||||||| |||||||||||| |||| || | ||||| | | |  | |||||| ||||||||||||||||||| |||      
T  8485165 agatttgaataaagctaatttggtttggaaagaatatgcattggctggatatccttatggagaagattgctactggaggtgggcttctaacctttatatt 8485066  T
Q  320 tattttttccctttattataatattttccttctccctatgat 361  Q
    |||||||||||||| | |||||||||||||||||| ||||||    
T  8485065 tattttttccctttctcataatattttccttctccttatgat 8485024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 1525814 - 1525863
Alignment:
Q  299 gtgggcttctaaccttcatactattttttccctttattataatattttcc 348  Q
    |||||||||||||||| |||||||||   |||||| ||||||||||||||    
T  1525814 gtgggcttctaacctttatactatttcccccctttcttataatattttcc 1525863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 15166592 - 15166779
Alignment:
Q  1 ggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaatttt 100  Q
    |||||||||||||||||||||| |||||| |||||||||||  |  ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  15166592 ggattcacgattataagaattagattttggtttaatatttcgtcacgtatgaagcatgacatattggtctcatatatgtataggcgtattttctaatttt 15166691  T
Q  101 ggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatctattnnnnnnngagcttgatcttgttccttcacaaatgtgt 191  Q
    | ||  ||| |   |||||||||||||||||||| ||||||||||| ||||| |       |||||||  |||||||||||| ||||||||    
T  15166692 gaaatatggat---ccacatatttgcaatttggaatggacttgctggatctaataaaaaaagagcttggccttgttccttcaaaaatgtgt 15166779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 15170848 - 15170998
Alignment:
Q  1 ggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacata--ttggtctcatgtatgtataggcgtattttccaatt 98  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||  |  ||||    
T  15170848 ggattcacgattataagaattaaattttggtttaatatttctgcgtgtatgaagcatgacatattttggtctcatgtatgtacaggcgtatgatataatt 15170947  T
Q  99 ttggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta 152  Q
    | | ||  |||||   |||||||||||||||||||||||||||| ||| |||||    
T  15170948 tcgaaatttgggt---ccacatatttgcaatttggattggacttactggatcta 15170998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 221 - 359
Target Start/End: Original strand, 15171070 - 15171208
Alignment:
Q  221 agatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcatact 320  Q
    |||||||||| |||||||||| |||||||||||||||| ||||||| ||  | || || || |||| |||||||||||||||||||||||||||  ||||    
T  15171070 agatttgaataatgctaatttcgtttggagagaatatgtatttgctaaaattcctcatggtccattaagctacttgaggtgggcttctaacctttgtact 15171169  T
Q  321 attttttccctttattataatattttccttctccctatg 359  Q
    ||||||||||||| ||||| |||||||||||||| ||||    
T  15171170 attttttccctttcttatagtattttccttctccttatg 15171208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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