View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0361_high_7 (Length: 359)

Name: NF0361_high_7
Description: NF0361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0361_high_7
NF0361_high_7
[»] chr4 (8 HSPs)
chr4 (184-335)||(36090730-36090881)
chr4 (101-181)||(36090613-36090693)
chr4 (180-289)||(21482236-21482345)
chr4 (184-335)||(36100202-36100347)
chr4 (107-168)||(34971929-34971990)
chr4 (104-164)||(36107659-36107719)
chr4 (184-236)||(36107554-36107606)
chr4 (283-335)||(34972138-34972190)
[»] chr2 (1 HSPs)
chr2 (191-289)||(8338126-8338224)
[»] chr6 (2 HSPs)
chr6 (107-168)||(6838416-6838477)
chr6 (184-240)||(6838311-6838367)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 184 - 335
Target Start/End: Original strand, 36090730 - 36090881
Alignment:
Q  184 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtcagaaacaggggaattccaagat 283  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||    
T  36090730 tgttttgaatctcttgtaatgtattttcatgttgaagatggttaagaatgaggtgttgttttgagtgtaaatgatgtcagaaacatgggaattcaaagat 36090829  T
Q  284 tgagaataattagaaaaacaagtgagaaaattttgaatgggagattgtgatg 335  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  36090830 tgagaataatgagaaaaacaagtgagaaaattttaaatgggagattgtgatg 36090881  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 36090613 - 36090693
Alignment:
Q  101 tgtccgccactttgaattctgatctgaatgttgttacttttagcacatttaactgttacttggacatgggaactatccttt 181  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36090613 tgtccgccacttcgaattctgatctgaatgttgttacttttagcacatttaactgttacttggacatgggaactatccttt 36090693  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 21482345 - 21482236
Alignment:
Q  180 ttgttgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtcagaaacaggggaattcca 279  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| | || ||| || |||||||||| ||||| | || ||||||| |    
T  21482345 ttgttgttttaaatctcttgttttgtattttcatgttgaggatggttgagaatgagatattgtttggagtgtaaatgatatcagagatagaggaattcaa 21482246  T
Q  280 agattgagaa 289  Q
    ||||||||||    
T  21482245 agattgagaa 21482236  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 335
Target Start/End: Complemental strand, 36100347 - 36100202
Alignment:
Q  184 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtcagaaacaggggaattccaagat 283  Q
    |||||| ||||||||||| ||||||||||| || ||||||||| ||||||||| ||| ||| ||| |||||| ||||||||       |||||  |||||    
T  36100347 tgttttaaatctcttgttatgtattttcatatttaggatggttgagaatgaggggttttttggaccgtaaataatgtcaga------tgaattaaaagat 36100254  T
Q  284 tgagaataattagaaaaacaagtgagaaaattttgaatgggagattgtgatg 335  Q
    |||||||||| | |||||||| |||||| |||||||||||| ||| ||||||    
T  36100253 tgagaataatgataaaaacaattgagaagattttgaatgggtgatagtgatg 36100202  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 34971929 - 34971990
Alignment:
Q  107 ccactttgaattctgatctgaatgttgttacttttagcacatttaactgttacttggacatg 168  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||| |||| ||||||||||    
T  34971929 ccacttcgaattcttatctgaatgttgttacttttggcacatttaattgttgcttggacatg 34971990  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 36107719 - 36107659
Alignment:
Q  104 ccgccactttgaattctgatctgaatgttgttacttttagcacatttaactgttacttgga 164  Q
    ||||||||| ||||||| |||||||||||||| ||||| |||||||||| |||| ||||||    
T  36107719 ccgccacttcgaattctaatctgaatgttgttgcttttggcacatttaattgtttcttgga 36107659  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 36107606 - 36107554
Alignment:
Q  184 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgagg 236  Q
    |||||| |||||||| || |||||||||||||||||||| ||| |||||||||    
T  36107606 tgttttaaatctcttattttgtattttcatgttgaggatagttgagaatgagg 36107554  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 34972138 - 34972190
Alignment:
Q  283 ttgagaataattagaaaaacaagtgagaaaattttgaatgggagattgtgatg 335  Q
    |||||||| || |||||||||  | ||||||||||||||||| ||||||||||    
T  34972138 ttgagaattatgagaaaaacagttaagaaaattttgaatgggtgattgtgatg 34972190  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 289
Target Start/End: Complemental strand, 8338224 - 8338126
Alignment:
Q  191 aatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtcagaaacaggggaattccaagattgagaa 289  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||| |  |||||||||  ||||| | |||||||||  ||| |||||||    
T  8338224 aatctcttgttatgtattttcatgtttaggatggttgagaatgaggtgttgtttggtgtgtaaatgacttcagagataggggaatttgaagtttgagaa 8338126  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 6838477 - 6838416
Alignment:
Q  107 ccactttgaattctgatctgaatgttgttacttttagcacatttaactgttacttggacatg 168  Q
    |||||| ||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  6838477 ccacttcgaattctaatctgaatgttgttgcttttggcacatttaactgtttcttggacatg 6838416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 6838367 - 6838311
Alignment:
Q  184 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgtt 240  Q
    |||||| |||||||| || |||||||| ||||||||||| ||| |||||||||||||    
T  6838367 tgttttaaatctcttattttgtatttttatgttgaggatagttgagaatgaggtgtt 6838311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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