View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0361_low_15 (Length: 333)
Name: NF0361_low_15
Description: NF0361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0361_low_15 |
 | |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 7328532 - 7328242
Alignment:
| Q |
14 |
aggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7328532 |
aggcaaaactaagtacataaattgaaataaatattatgttggagaaaaacttactttcagcaggttgaaaccagactttcgacataatccttgatagagt |
7328433 |
T |
|
| Q |
114 |
accaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgt |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7328432 |
accaacatatctttttgttaactctagattccagtactctattagttctcaagttatagagaattgcttggttatgcaggcagcttgcgaatacgattgt |
7328333 |
T |
|
| Q |
214 |
atcaccatcttcagaaagatgcaatgcctttaatttcaaccacgagtaaacaaatcttgaatttaaattcacttgaaggttgtgatagcta |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7328332 |
atcaccatcttcagaaagatgcaatgcctttaatttcaaccacgagtaaacaaatcttgaatttaaattcacttgaaggttgtgatagcta |
7328242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 24 - 304
Target Start/End: Original strand, 7310936 - 7311216
Alignment:
| Q |
24 |
aagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatat |
123 |
Q |
| |
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||||||||||| |||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7310936 |
aagtacataaactgaaataaatattatgttagaaaaaaacttactttcaataggttgaaaccagactttcgacataatccttgatagagaaccaacatat |
7311035 |
T |
|
| Q |
124 |
ctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatcaccatct |
223 |
Q |
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|
|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||| |
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| T |
7311036 |
ctttttgttaactctagatttcagtactctattagttctcaagttatacagaattgcttggttatctaggcagcttccgaatactattgtatcaccatct |
7311135 |
T |
|
| Q |
224 |
tcagaaagatgcaatgcctttaatttcaaccacgagtaaacaaatcttgaatttaaattcacttgaaggttgtgatagcta |
304 |
Q |
| |
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|||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| | |||| |||||||||||| |
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| T |
7311136 |
tcagaaagatgcaacggctttaatttcaacctcgagtaaacaactcttgaatttaaattcattcgaagattgtgatagcta |
7311216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 7306378 - 7306603
Alignment:
| Q |
18 |
aaaactaagtacataaattgaaataaatattatgttggagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtacca |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
7306378 |
aaaaccaagtacataaattgaaataaatattatgttggagaaaaacctacgttcaataggttgagaccagactttcgacataatccttgatagagaacca |
7306477 |
T |
|
| Q |
118 |
acatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaattgcttggttatgtaggcagcttgcgaatacgattgtatca |
217 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7306478 |
acatatctttttgttgactctagatttcagtactctattagttctcaagttatacagaattgcttggttatctaggcagcttgcgaatacgattgtatca |
7306577 |
T |
|
| Q |
218 |
ccatcttcagaaagatgcaatgcctt |
243 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
7306578 |
ccatcttcagaaagatgcaatgcctt |
7306603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 55 - 252
Target Start/End: Original strand, 35205658 - 35205863
Alignment:
| Q |
55 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
154 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| |||||||||||||||||||||| | ||||||||||||| ||||||| | ||||| ||||| |||| |
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| T |
35205658 |
gagaacaacttacattcaactagttgaaaccaggctttcgacataatccttgatagtgaaccaacatatcttattgttaattgaagatttcagtactcta |
35205757 |
T |
|
| Q |
155 |
ttagttctcaagttatagag-----aattgcttggttatgtaggcagct---tgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaa |
246 |
Q |
| |
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|| |||||| |||||||||| |||| |||||| | |||| | | ||||||||||| |||||||||||| |||||||||||||||| | |||| |
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| T |
35205758 |
ttggttctccagttatagagaatataattacttggtgttttaggttgtttgctgcgaatacgagtgtatcaccatcctcagaaagatgcaatggcattaa |
35205857 |
T |
|
| Q |
247 |
tttcaa |
252 |
Q |
| |
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| |||| |
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| T |
35205858 |
tatcaa |
35205863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 20415161 - 20414999
Alignment:
| Q |
77 |
gttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaa |
176 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| |||||||| | || ||||||||||| | || || || | ||||| ||||| | |||||||||| |
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|
| T |
20415161 |
gttgaaaccagactttcaacataacagttgatagagaaccaacatttgttattgttaactctgggtttcaatactatattatttctccaattatagagaa |
20415062 |
T |
|
| Q |
177 |
ttgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatg |
239 |
Q |
| |
|
||||| ||| ||||||| | |||||||||| | ||||||||||| || |||||||||||| |
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| T |
20415061 |
ttgctcggtcttgtaggctgtttgcgaatacaagtgtatcaccatttttgaaaagatgcaatg |
20414999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 78 - 252
Target Start/End: Original strand, 21210247 - 21210420
Alignment:
| Q |
78 |
ttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtctattagttctcaagttatagagaat |
177 |
Q |
| |
|
|||||||||||||| |||||||||||| | || || |||||| |||||| | ||||| | | |||| ||||| | ||||| |||| |||||||| |||| |
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|
| T |
21210247 |
ttgaaaccagactt-cgacataatcctcggtacagaaccaacgtatcttatggttaattttggatttcagtactgtattatttctgaagttatatagaac |
21210345 |
T |
|
| Q |
178 |
tgcttggttatgtaggcagcttgcgaatacgattgtatcaccatcttcagaaagatgcaatgcctttaatttcaa |
252 |
Q |
| |
|
||||||||| || ||| | || ||||||| ||||||||| || |||||||||||||| | |||||||||||| |
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|
| T |
21210346 |
tgcttggttttgcaggttgtttacgaatactattgtatcaatattttcagaaagatgcaccggctttaatttcaa |
21210420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 21218469 - 21218553
Alignment:
| Q |
56 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctag |
140 |
Q |
| |
|
|||| ||||||| |||| | |||||||||| |||||||||||||| | || ||| |||||| |||||||||||||| ||||| |
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|
| T |
21218469 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatcatagactgaggaccaacttatctttttgttaattctag |
21218553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 31442749 - 31442874
Alignment:
| Q |
55 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
154 |
Q |
| |
|
||||| ||||||| |||| | |||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||| || || || |||| |
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|
| T |
31442749 |
gagaagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactcta |
31442848 |
T |
|
| Q |
155 |
ttagttctcaagttatagagaattgc |
180 |
Q |
| |
|
||| ||||| | |||||||||||||| |
|
|
| T |
31442849 |
ttatttctccaattatagagaattgc |
31442874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 24491 - 24360
Alignment:
| Q |
55 |
gagaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtagtcta |
154 |
Q |
| |
|
||||| ||||||| ||| || |||| ||||| ||||| ||||||| || ||||| |||||||||||||||||||||| |||| || || || |||| |
|
|
| T |
24491 |
gagaagaacttactctcaacaagttggaaccatgctttcaacataattgtttatagatcaccaacatatctttttgttaaccctagttttcactactcta |
24392 |
T |
|
| Q |
155 |
ttagttctcaagttatagagaattgcttggtt |
186 |
Q |
| |
|
||| || || | ||||||||||||||| |||| |
|
|
| T |
24391 |
ttatttatccaattatagagaattgctcggtt |
24360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 42298420 - 42298342
Alignment:
| Q |
56 |
agaaaaacttacattcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaa |
134 |
Q |
| |
|
|||| ||||||| |||| | |||||||||| |||||||||||||| || || ||| |||||||||||||| |||||| |
|
|
| T |
42298420 |
agaagaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgaggaccaacatatctttctgttaa |
42298342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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