View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0361_low_2 (Length: 773)

Name: NF0361_low_2
Description: NF0361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0361_low_2
NF0361_low_2
[»] chr4 (1 HSPs)
chr4 (1-702)||(51390626-51391328)


Alignment Details
Target: chr4 (Bit Score: 667; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 1 - 702
Target Start/End: Original strand, 51390626 - 51391328
Alignment:
Q  1 ctgatggtctttctttggatgaattgcgtcgcaggagaattgaaaggtttggtaggtgatgaaatgtaatcatgatgatagtagaaatgaaatattaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51390626 ctgatggtctttctttggatgaattgcgtcgcaggagaattgaaaggtttggtaggtgatgaaatgtaatcatgatgatagtagaaatgaaatattaaca 51390725  T
Q  101 aataatgcaattggatgtagaaatttagttcattctattggatattagacttgtttttattttagatggatataagtttgttgtgtaactagagctgatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51390726 aataatgcaattggatgtagaaatttagttcattctattggatattagacttgtttttattttagatggatataagtttgttgtgtaactagagctgatg 51390825  T
Q  201 atactgcaacgaattattacatcaatttagcgagttacatttacattacattttttcttggtacatagaacagtggaagcttttcttgcaagattggttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51390826 atactgcaacgaattattacatcaatttagcgagttacatttacattacattttttcttggtacatagaacagtggaagcttttcttgcaagattggttt 51390925  T
Q  301 agcatttgtttccacattgattttcgttaaaatgtt-gtattaatattgtcgtttgttaaattttatctgaaattttgttgcgattgagcagttgacaac 399  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51390926 agcatttgtttccacattgattttcgttaaaatgtttgtattaatattgtcgtttgtcaaattttatctgaaattttgttgcgattgagcagttgacaac 51391025  T
Q  400 tgctgctgtgaatcttgagctaccccgacgtaattttcagtagctctaatgtgtagcttctgattcatcgtgatgttcgaatccccaagcatacatgtag 499  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51391026 tgctactgtgaatcttgagctaccccgacgtaattttcagtagctctaatgtgtagcttctgattcatagtgatgttcgaatccccaagcatacatgtag 51391125  T
Q  500 agtgcttgttcagatgtaaccttgaccgtaaatatgtaatggaatggggggatgtcttggattgatttgttttgaactgcttacttcaaatacggttatt 599  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51391126 agtgcttgttcagatgtaaccttgactgtaaatatgtaatggaatggggggatgtcttggattgatttgttttgaattgcttacttcaaatacggttatt 51391225  T
Q  600 tgaacaatatagttgttggtgtcttatcttaggtgttgctgggttctgggtttggagaagaagggtatgacgatgaagaaggattttgggtttcatctca 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  51391226 tgaacaatatagttgttggtgtcttatcttaggtgttgctgggttctgggtttggagaaaaagggtatgatgatgaagaaggattttgggtttcatctca 51391325  T
Q  700 ctc 702  Q
    |||    
T  51391326 ctc 51391328  T

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