View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0361_low_20 (Length: 299)
Name: NF0361_low_20
Description: NF0361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0361_low_20 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 43434973 - 43434793
Alignment:
| Q |
1 |
aaacataaacaagagtttcatgggtcaatgattcacgacattcttccaactctttctctaactcttgagaccaatcattggtaaaaacacgctctaaaat |
100 |
Q |
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| T |
43434973 |
aaacataaacaacagtttcatgagtcaatgattcacgacatgcttccaactctttctctaactcttcagaccaatcattggtaaaaacacgctccaaaat |
43434874 |
T |
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| Q |
101 |
catgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaacataacaaatctttgaatcgattcgaaagagg |
181 |
Q |
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| T |
43434873 |
catgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaacataacaaatctttggatcggttcaaaagagg |
43434793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 43440840 - 43440691
Alignment:
| Q |
1 |
aaacataaacaagagtttcatgggtcaatgattcacgacattcttccaactctttctctaactcttgagaccaatcattggtaaaaacacgctctaaaat |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
43440840 |
aaacataaacaacagtttcatgggtcaatgattcacgacatgcttccaactctttctctaactcttcagaccaatcgttggtgtaaacacgctctaaaat |
43440741 |
T |
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| Q |
101 |
catgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaac |
150 |
Q |
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| T |
43440740 |
catgttgggttttgaagaaaaacagtgtttttgatgattgttgtgaaaac |
43440691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 43426468 - 43426320
Alignment:
| Q |
1 |
aaacataaacaagagtttcatgggtcaatgattcacgacattcttccaactctttctctaactcttgagaccaatcattggtaaaaacacgctctaaaat |
100 |
Q |
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| T |
43426468 |
aaacataaacaacagtttcatgggtcaatgattcacgacattcttcaaattctttctctaactcttcagaccaatcattggtgtaaacacgctctaaaat |
43426369 |
T |
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| Q |
101 |
catgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaa |
149 |
Q |
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| T |
43426368 |
tgagttgggttttgaagaaaaatagtgttttttatgactgttgtgaaaa |
43426320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 20457 - 20220
Alignment:
| Q |
1 |
aaacataaacaagagtttcatgggtcaatgattcacgacattcttccaactctttctctaactcttgagaccaatcattggtaaaaacacgctctaaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20457 |
aaacataaacaagagtttcatgggtcaatgattcacgacatgcttccaact--------------tgagaccaatcattggtaaaaacacgctctaaaat |
20372 |
T |
|
| Q |
101 |
catgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaacataacaaatctttgaatcgattc--------------gaaagaggaagaa |
186 |
Q |
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| T |
20371 |
catgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaacataacaaatctttggatcgattccaaagagggagtgaaaaagaggaagaa |
20272 |
T |
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| Q |
187 |
gaaaagcgagaaacctggttcaagttccgagctgcgagaactcgtgatgatg |
238 |
Q |
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|||||| |||||||||||||| ||||||||||| ||||||||| ||||||| |
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| T |
20271 |
gaaaagtgagaaacctggttctggttccgagctgtgagaactcgggatgatg |
20220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 41930507 - 41930402
Alignment:
| Q |
14 |
agtttcatgggtcaatgattcacgacattcttccaactctttctctaactcttgagaccaatcattggtaaaaacacgctctaaaatcatgttgggtttt |
113 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
41930507 |
agtttcatgggtcaatgattcacgacatgcttccaactctttctctaactcttcagaccaatcgttggtgtaaacacgctctaaaatcatgttgggtttt |
41930408 |
T |
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| Q |
114 |
gaagaa |
119 |
Q |
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|||||| |
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| T |
41930407 |
gaagaa |
41930402 |
T |
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