View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0361_low_5 (Length: 467)
Name: NF0361_low_5
Description: NF0361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0361_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 91 - 461
Target Start/End: Complemental strand, 16964137 - 16963767
Alignment:
| Q |
91 |
aaactttacctcatcaattattactgtaatcttatttaaattatgattcttgatttttcaggagacctctatgccagctgggnnnnnnnngtctccaaga |
190 |
Q |
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| T |
16964137 |
aaactttacctcatcaattattactgtaatcttatttaaattatgattcttgatttttcaggagacctctatgccagctgggaaaaaaaagtctccaaga |
16964038 |
T |
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| Q |
191 |
gcacataacattatattcaaattcttatttgttatttgcatattttgtatttaaagaatgctataattcacttcaatattacactgtcagtgtattgaaa |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16964037 |
gcacataacattatattcaaattcttatttgttatttgcatattttgtatttaaagaatgctataattcacttcaatattacactgtcagtgtattgaaa |
16963938 |
T |
|
| Q |
291 |
tggagagcaatgctacaatttttcttctgagaagcattgaatgcttttccttaacattacactttgagcaaacacctcttccaacacaattccatttaca |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16963937 |
tggagagcaatgctacaatttttcttctgagaagcattgaatgcttttccttaacattacactttgagcaaacacctcttccaacacaattccatttaca |
16963838 |
T |
|
| Q |
391 |
tcaatttcttgtgttcaaatttcatctcctctctttattatcatttttgccatttcagtgcttcttttctg |
461 |
Q |
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| T |
16963837 |
tcaatttcttgtgttcaaatttcatctcctctctttattatcatttttgccatttcagtgcttcttttctg |
16963767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 35256700 - 35256759
Alignment:
| Q |
190 |
agcacataacattatattcaaattcttatttgttatttgcatattttgtatttaaagaat |
249 |
Q |
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|||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
35256700 |
agcatataacattatattcagattcttatttggtatttacatattttgtatttaaagaat |
35256759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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