View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0361_low_7 (Length: 392)
Name: NF0361_low_7
Description: NF0361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0361_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 298
Target Start/End: Original strand, 36090766 - 36091058
Alignment:
| Q |
5 |
gatggttaagaatgaggtgttcttttgactgtaaatgatgtcagaaacaggggaattccaagattgagaataattagaaaaacaagtgagaaaattttga |
104 |
Q |
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| T |
36090766 |
gatggttaagaatgaggtgttgttttgagtgtaaatgatgtcagaaacatgggaattcaaagattgagaataatgagaaaaacaagtgagaaaattttaa |
36090865 |
T |
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| Q |
105 |
atgggagattgtgatgttgttgttgaaacagacaagacaattgttatagttgtcaagagnnnnnnncaaaatcctcatagtttacgtggtatagtaacaa |
204 |
Q |
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| T |
36090866 |
atgggagattgtgatgttgttgtagaaacagacaagacaactgttatagttgtcaagag-aaaaaacaaaatcctcatagtttacgtggtatagtaacaa |
36090964 |
T |
|
| Q |
205 |
cgtggtttgtatttgttgtgcatctcattgtgcaacattgcactctaaatatattgatgcatcctgtagttgttgttaactacataaagaaaaa |
298 |
Q |
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| T |
36090965 |
tgtggtttgtatttgttgtgcatctcattgtgcaacattgcactctaaatatattgatgcatcctctagttgttgttaactacatatagaaaaa |
36091058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 36100313 - 36100159
Alignment:
| Q |
3 |
aggatggttaagaatgaggtgttcttttgactgtaaatgatgtcagaaacaggggaattccaagattgagaataattagaaaaacaagtgagaaaatttt |
102 |
Q |
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| T |
36100313 |
aggatggttgagaatgaggggttttttggaccgtaaataatgtcagat------gaattaaaagattgagaataatgataaaaacaattgagaagatttt |
36100220 |
T |
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| Q |
103 |
gaatgggagattgtgatgttgttgttgaaacagacaagacaattgttatagttgtcaagag |
163 |
Q |
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| T |
36100219 |
gaatgggtgatagtgatgttgttgttgaaacagacatgaaaattgttaaggttgtcaagag |
36100159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 36091466 - 36091550
Alignment:
| Q |
294 |
aaaaatgctatttaaagcgaataagtgccaggccgatacactgtggcatgtatgccgctcacccattatctgatgatgtccatct |
378 |
Q |
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| T |
36091466 |
aaaaatgctatttaaagagagaaagtgccaggccgatacactgtggcatgtatgccgcttacccattatctcatgatttccatct |
36091550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 21482309 - 21482164
Alignment:
| Q |
1 |
tgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtcagaaacaggggaattccaagattgagaataattagaaaaacaagtgagaaaatt |
100 |
Q |
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| T |
21482309 |
tgaggatggttgagaatgagatattgtttggagtgtaaatgatatcagagatagaggaattcaaagattgagaa---------aagcaattgagaaaatt |
21482219 |
T |
|
| Q |
101 |
ttgaatgggagattgtgatgttgttgttgaaacagacaagacaattgttatagtt |
155 |
Q |
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| T |
21482218 |
ttgaaagggtgattgtgatgttgttgttgaaatagacatgacaattgttaaagtt |
21482164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 34972138 - 34972199
Alignment:
| Q |
68 |
ttgagaataattagaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttg |
129 |
Q |
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| T |
34972138 |
ttgagaattatgagaaaaacagttaagaaaattttgaatgggtgattgtgatgttgttgttg |
34972199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 36107356 - 36107321
Alignment:
| Q |
234 |
gtgcaacattgcactctaaatatattgatgcatcct |
269 |
Q |
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| T |
36107356 |
gtgcaacattgcactctatatatattgatgcatcct |
36107321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 8338129 - 8338046
Alignment:
| Q |
80 |
agaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttgaaacagacaagacaattgttatagttgtcaagag |
163 |
Q |
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| T |
8338129 |
agaaaaacaattgagaaaagtttaaatggatgattgtgatgttgttgttgaaatagacataaaaattgttaaggttgtcaagag |
8338046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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