View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0362_high_2 (Length: 299)
Name: NF0362_high_2
Description: NF0362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0362_high_2 |
 | |
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| [»] scaffold0264 (1 HSPs) |
| | |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 20205705 - 20205444
Alignment:
| Q |
10 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205705 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
20205606 |
T |
|
| Q |
110 |
tgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20205605 |
tgcacgccggatttgtcgcctaatgattgcagaacctgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttc |
20205506 |
T |
|
| Q |
210 |
tttatcctagctgtaatgtaaggtatgaattatatccattttataggtctattactgttctt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20205505 |
tttatcctagctgtaatgtaaggtatgaattatatccattttataggtctattactgttctt |
20205444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 22099728 - 22099467
Alignment:
| Q |
10 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099728 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
22099629 |
T |
|
| Q |
110 |
tgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099628 |
tgcacgccggatttgtcgcctaatgattgcagaacctgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttc |
22099529 |
T |
|
| Q |
210 |
tttatcctagctgtaatgtaaggtatgaattatatccattttataggtctattactgttctt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22099528 |
tttatcctagctgtaatgtaaggtatgaattatatccattttataggtctattactgttctt |
22099467 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 21972262 - 21972019
Alignment:
| Q |
14 |
gaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgca |
113 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||| ||||||||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||| |
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|
| T |
21972262 |
gaagcagcaagtccgcttagtggtgacaagaac---aagtttgcaacaaaagaagcacgagtttcggaaaatcagaccctttacagtctagctcagtgca |
21972166 |
T |
|
| Q |
114 |
cgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttcttta |
213 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||| | || |||| ||||||||| || |||||||||||||| |
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|
| T |
21972165 |
cgctggatttgtcgcctaatgattgcagaacctgtctcactagtgctattgagacactttcacaaagctgtgttggaaaggttggtgggagatttcttta |
21972066 |
T |
|
| Q |
214 |
tcctagctgtaatgtaaggtatgaattatatccattttataggtcta |
260 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21972065 |
tcctagctgtaatgttaggtatgaattatatccattttataggtcta |
21972019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 20086381 - 20086132
Alignment:
| Q |
14 |
gaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagatt-cggaaaatcagaccctttactgtctagctcagtgc |
112 |
Q |
| |
|
||||||||| ||||||||| | |||||| ||| |||||||||| || ||||||||| | |||| | ||| |||||||||||||||||||||||||||| |
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|
| T |
20086381 |
gaagcagcaggtccacttactactgacaacaacaagaagtttgccacaaaagaagca-aggatttctgaatctcagaccctttactgtctagctcagtgc |
20086283 |
T |
|
| Q |
113 |
acgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttcttt |
212 |
Q |
| |
|
|||||||| ||||| || ||||||||||| |||||||| |||||||||||||||| || | | ||||||||||||||||||| |||||| |||||| |
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|
| T |
20086282 |
acgccggacttgtcacccggtgattgcagaacctgtctcaatagtgctattgagaaacttcctagctgttgtgatggaaaggtgggtgggagagttcttt |
20086183 |
T |
|
| Q |
213 |
atcctagctgtaatgtaaggtatgaattatatccattttataggtctatta |
263 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
20086182 |
ttcctagctgtaatgttaggtatgaattatatcctttttataggtctatta |
20086132 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 22204785 - 22205031
Alignment:
| Q |
14 |
gaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagatt-cggaaaatcagaccctttactgtctagctcagtgc |
112 |
Q |
| |
|
||||||||| ||||||||| || |||||| || ||| ||||| || ||||||||| |||||| | ||| ||||||||||||||| |||||||||||| |
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|
| T |
22204785 |
gaagcagcaggtccacttactgctgacaacaa---gaaatttgccacaaaagaagca-aagatttctgaatctcagaccctttactgcctagctcagtgc |
22204880 |
T |
|
| Q |
113 |
acgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttcttt |
212 |
Q |
| |
|
|||||||| ||||| || ||||||||||| |||||| | ||||||||||||| || || | | ||||||||||||||||||| | |||| || ||| |
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|
| T |
22204881 |
acgccggacttgtcacccggtgattgcagaacctgtcttaatagtgctattgaggaacttcctagctgttgtgatggaaaggtgggtgcgagagttgttt |
22204980 |
T |
|
| Q |
213 |
atcctagctgtaatgtaaggtatgaattatatccattttataggtctatta |
263 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
22204981 |
ttcctagctgtaatattaggtatgaactatatcctttttataggtctatta |
22205031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 24385068 - 24385146
Alignment:
| Q |
87 |
agaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattga |
165 |
Q |
| |
|
|||| ||||||| | |||||||||||||||| || ||||| |||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
24385068 |
agacgctttactatttagctcagtgcacgccagacttgtcccctaatgattgcagaacctgtctcaatagtgctattga |
24385146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 260
Target Start/End: Complemental strand, 20238216 - 20238048
Alignment:
| Q |
92 |
ctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| ||||||||||||| ||| ||| || |||||||| |||| ||||||| | |||||||| |
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|
| T |
20238216 |
ctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcctcggttgtgctattaggaaactttcaaatgtgtatgatggaa |
20238117 |
T |
|
| Q |
192 |
aggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattttataggtcta |
260 |
Q |
| |
|
|| ||| |||||| | | |||||||| |||||| | |||||||| ||||||| |||||||| |||| |
|
|
| T |
20238116 |
agcagggtgggagaaatttatatcctagttgtaatattaggtatgagctatatcctttttatagatcta |
20238048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 260
Target Start/End: Complemental strand, 22132200 - 22132032
Alignment:
| Q |
92 |
ctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| ||||||||||||| ||| ||| || |||||||| |||| ||||||| | |||||||| |
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|
| T |
22132200 |
ctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcctcggttgtgctattaggaaactttcaaatgtgtatgatggaa |
22132101 |
T |
|
| Q |
192 |
aggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattttataggtcta |
260 |
Q |
| |
|
|| ||| |||||| | | |||||||| |||||| | |||||||| ||||||| |||||||| |||| |
|
|
| T |
22132100 |
agcagggtgggagaaatttatatcctagttgtaatattaggtatgagctatatcctttttatagatcta |
22132032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 16334 - 16081
Alignment:
| Q |
10 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
109 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| ||| ||||||||||||| |||||||||| || |||| ||||||||||||| ||||||||||||||| |
|
|
| T |
16334 |
agatgaagcagcacgtccacttattggagacataaaaaagaagtttgcaacaaaagaagcacgagtttcgaaaaatcagaccctatactgtctagctcag |
16235 |
T |
|
| Q |
110 |
tgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttc |
209 |
Q |
| |
|
|||||||| || ||||| ||||| ||||||||| ||||||| || ||||||||| || | | || || ||||||||||||| |||||||||| |
|
|
| T |
16234 |
tgcacgccagacttgtctcctaacaattgcagaacctgtctctatactgctattgatcttcttcctctgtgtggttatggaaaggtgggtgggagatttc |
16135 |
T |
|
| Q |
210 |
tttatcctagctgtaatgtaaggtatgaattatatccattttataggtctatta |
263 |
Q |
| |
|
||| |||||||||||||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
16134 |
ttttgcctagctgtaatgttaggtatgaactatatcctttttataggtctatta |
16081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 47607 - 47858
Alignment:
| Q |
10 |
agatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcag |
109 |
Q |
| |
|
||||||||||||| ||||||||||||| || | ||| ||||||||||||| |||||||||| || |||| |||| |||||||||||||||||||||||| |
|
|
| T |
47607 |
agatgaagcagcacgtccacttattggagatataaaaaagaagtttgcaacaaaagaagcacgagtttcgaaaaaacagaccctttactgtctagctcag |
47706 |
T |
|
| Q |
110 |
tgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttc |
209 |
Q |
| |
|
|||||||| || ||||| ||||| ||||||||| ||||||| || ||||||||| || | || || |||||||||| ||| |||| || |
|
|
| T |
47707 |
tgcacgccagacttgtctcctaacaattgcagaacctgtctctatactgctattgattttcttgctcagctttttgatggaaagcagggtgggatggttt |
47806 |
T |
|
| Q |
210 |
tttatcctagctgtaatgtaaggtatgaattatatccattttataggtctat |
261 |
Q |
| |
|
||| ||||||||||||||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
47807 |
tttttcctagctgtaatgttaggtatgaactatatcctttttataggtctat |
47858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 261
Target Start/End: Original strand, 5199 - 5379
Alignment:
| Q |
81 |
aaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagag |
180 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| ||||| ||||| ||||||||| ||||||| ||| |||||||| | || | | | |
|
|
| T |
5199 |
aaaatcagaccctgtactgtctagaacagtgcacgccggacttgtcccctaacaattgcagaacctgtctccatagagctattgaatatcttcctatggt |
5298 |
T |
|
| Q |
181 |
ttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccattttataggtctat |
261 |
Q |
| |
|
|||||||||||||| ||| |||||| || ||| ||||||||||||| | ||||||||| ||||||| |||||||||||||| |
|
|
| T |
5299 |
ttgtgatggaaaggagggtgggagagttgtttttcctagctgtaatattaggtatgaactatatcctttttataggtctat |
5379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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