View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0362_low_6 (Length: 249)

Name: NF0362_low_6
Description: NF0362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0362_low_6
NF0362_low_6
[»] chr1 (15 HSPs)
chr1 (1-232)||(8941694-8941925)
chr1 (5-232)||(8931778-8932005)
chr1 (5-232)||(8955700-8955927)
chr1 (1-232)||(8920373-8920604)
chr1 (20-186)||(9318508-9318674)
chr1 (12-186)||(9348759-9348933)
chr1 (36-161)||(9486426-9486551)
chr1 (36-159)||(9399382-9399505)
chr1 (36-161)||(9433074-9433199)
chr1 (36-133)||(9454061-9454158)
chr1 (18-186)||(9319628-9319796)
chr1 (18-186)||(9349945-9350113)
chr1 (18-133)||(9255244-9255359)
chr1 (28-133)||(9097036-9097141)
chr1 (28-125)||(9105217-9105314)
[»] chr3 (1 HSPs)
chr3 (32-184)||(9159320-9159472)
[»] chr6 (1 HSPs)
chr6 (17-133)||(15927411-15927527)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8941925 - 8941694
Alignment:
Q  1 attgggagaagttacggatgaggaaaagaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8941925 attgggagaagttacggatgaggaaaaaaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatg 8941826  T
Q  101 gacaaagtaatagaaatgcttgaagtagatattaaagacattaaaattcctccaaaaccttctccatatccaactgaaattattcaagataatggagtta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8941825 gacaaagtaatagaaatgcttgaagtagatattaaagacattaaaattcctccaaaaccttctccatatccaactgaaattattcaagataatggagtta 8941726  T
Q  201 gctctaatgaatcattatcagatgatgatgtc 232  Q
    ||||||||||||||||||||||||||||||||    
T  8941725 gctctaatgaatcattatcagatgatgatgtc 8941694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 8932005 - 8931778
Alignment:
Q  5 ggagaagttacggatgaggaaaagaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggaca 104  Q
    ||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| || | ||| ||||||||||||||||    
T  8932005 ggagaagctaccgatgaggaaaagaaaaatgtgaagaagatgttcataattgctctgtggtgtatacaattgaaccctattgatcgtccttcaatggaca 8931906  T
Q  105 aagtaatagaaatgcttgaagtagatattaaagacattaaaattcctccaaaaccttctccatatccaactgaaattattcaagataatggagttagctc 204  Q
     |||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8931905 gagtaatagaaatgcttgaaggagatattgaagacattgaaattcctccaaagccttctccatatccaactgaaattattcaagataatggagttagctc 8931806  T
Q  205 taatgaatcattatcagatgatgatgtc 232  Q
    || |||||| ||||  ||||||||||||    
T  8931805 tactgaatctttatgggatgatgatgtc 8931778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 8955927 - 8955700
Alignment:
Q  5 ggagaagttacggatgaggaaaagaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggaca 104  Q
    ||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| || | ||| ||||||||||||||||    
T  8955927 ggagaagctaccgatgaggaaaagaaaaatgtgaagaagatgttcataattgctctgtggtgtatacaattgaaccctattgatcgtccttcaatggaca 8955828  T
Q  105 aagtaatagaaatgcttgaagtagatattaaagacattaaaattcctccaaaaccttctccatatccaactgaaattattcaagataatggagttagctc 204  Q
     |||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8955827 gagtaatagaaatgcttgaaggagatattgaagatattgaaattcctccaaaaccttctccatatccaactgaaattattcaagacaatggagttagctc 8955728  T
Q  205 taatgaatcattatcagatgatgatgtc 232  Q
     |||||||| || || ||||||||||||    
T  8955727 aaatgaatctttttcggatgatgatgtc 8955700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8920604 - 8920373
Alignment:
Q  1 attgggagaagttacggatgaggaaaagaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatg 100  Q
    ||||||||||| |||  ||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||||||| || | ||| ||||||||||||    
T  8920604 attgggagaagctaccaatgaggaaaagaaaaatgtgaagaagatgttcataattgctatatggtgtatacaattgaaccctattgatcgtccttcaatg 8920505  T
Q  101 gacaaagtaatagaaatgcttgaagtagatattaaagacattaaaattcctccaaaaccttctccatatccaactgaaattattcaagataatggagtta 200  Q
     ||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |    
T  8920504 tacagagtaatagaaatgcttgaaggagatattgaagacattaaaattcctccaaaaccttctccatatccaactgaaattattcaaggtgatggagtaa 8920405  T
Q  201 gctctaatgaatcattatcagatgatgatgtc 232  Q
    || ||| |||||| ||||  ||||||||||||    
T  8920404 gcactagtgaatctttatgggatgatgatgtc 8920373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 9318508 - 9318674
Alignment:
Q  20 gaggaaaagaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaatgc 119  Q
    |||||||| || ||||||||||| ||||||||| |||| || ||||||||||||||||| ||   ||| |||||||||||| ||||||| ||||| ||||    
T  9318508 gaggaaaataataatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgc 9318607  T
Q  120 ttgaagtagatattaaagacattaaaattcctccaaaaccttctccatatccaactgaaattattca 186  Q
    |||||| | ||||| || | ||| |||| |||||||| || |||   ||||||| |||||| |||||    
T  9318608 ttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattca 9318674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 9348759 - 9348933
Alignment:
Q  12 ttacggatgaggaaaagaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaat 111  Q
    |||| ||||||||||| |  ||||||||||||||||||||| |||| || ||||||||||| || || || | ||| |||||| ||||| | ||||||||    
T  9348759 ttactgatgaggaaaacagtaatgtgaagaaaatgttcataattgcattatggtgtatacagttaaaaccaagtgatcgtcctgcaatgaataaagtaat 9348858  T
Q  112 agaaatgcttgaagtagatattaaagacattaaaattcctccaaaaccttctccatatccaactgaaattattca 186  Q
    ||| ||||| |||| ||||||| | || ||| |||| |||||||| |||||||  ||||||  ||||| ||||||    
T  9348859 agagatgctcgaaggagatattgaggatattgaaatgcctccaaagccttctctttatccagatgaaaatattca 9348933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 161
Target Start/End: Original strand, 9486426 - 9486551
Alignment:
Q  36 tgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaatgcttgaagtagatattaa 135  Q
    |||||||||||||| |||||||  | ||||||||||| ||||| |||| ||| |||||||||||| |||||||| |||| |||||||||| ||||||| |    
T  9486426 tgaagaaaatgttcctagttgcactttggtgtatacagttgaaacccattgatcgtccttcaatgaacaaagtagtagagatgcttgaaggagatattga 9486525  T
Q  136 agacattaaaattcctccaaaacctt 161  Q
    | | ||| |||| |||||||| ||||    
T  9486526 aaatattgaaatacctccaaagcctt 9486551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 159
Target Start/End: Complemental strand, 9399505 - 9399382
Alignment:
Q  36 tgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaatgcttgaagtagatattaa 135  Q
    ||||||||||||||||||||||  | ||||||||||| ||||| |||| ||| |||||||||||| |||||||| |||| ||||||||||  |||||| |    
T  9399505 tgaagaaaatgttcatagttgcactttggtgtatacagttgaaacccattgatcgtccttcaatgaacaaagtagtagagatgcttgaaggggatattga 9399406  T
Q  136 agacattaaaattcctccaaaacc 159  Q
    |    || ||||||||||||||||    
T  9399405 aagttttgaaattcctccaaaacc 9399382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 161
Target Start/End: Original strand, 9433074 - 9433199
Alignment:
Q  36 tgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaatgcttgaagtagatattaa 135  Q
    |||||||||| |||||||||||  | ||||||||||| ||||| |||  ||| |||||||||||| |||||||| |||| |||||||||| ||||||| |    
T  9433074 tgaagaaaatattcatagttgcactttggtgtatacagttgaaacccgttgatcgtccttcaatgaacaaagtagtagagatgcttgaaggagatattga 9433173  T
Q  136 agacattaaaattcctccaaaacctt 161  Q
    | | ||| |||| |||||||| ||||    
T  9433174 aaatattgaaatgcctccaaagcctt 9433199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 9454061 - 9454158
Alignment:
Q  36 tgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaatgcttgaagtagatatt 133  Q
    |||||||||||||||||||||  || ||||||||||| ||||| |||| ||| |||||||||||| | |||||| |||| |||||||||| |||||||    
T  9454061 tgaagaaaatgttcatagttggattatggtgtatacagttgaaacccattgatcgtccttcaatgaaaaaagtagtagagatgcttgaaggagatatt 9454158  T

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Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 9319796 - 9319628
Alignment:
Q  18 atgaggaaaagaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaat 117  Q
    |||||||||| |  ||||||||||| ||||||||| | || || ||||||||||||||||| ||   ||| |||||||||||| ||||||| ||||| ||    
T  9319796 atgaggaaaatattaatgtgaagaagatgttcataatagcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagat 9319697  T
Q  118 gcttgaagtagatattaaagacattaaaattcctccaaaaccttctccatatccaactgaaattattca 186  Q
    |||||||| | ||||| || | ||| |||| |||||||| || |||   ||||||| |||||| |||||    
T  9319696 gcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattca 9319628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 9350113 - 9349945
Alignment:
Q  18 atgaggaaaagaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaat 117  Q
    |||||||||| |  ||||||||||| ||||||||| | || || ||||||||||||||||| ||   ||| |||||||||||| ||||||| ||||| ||    
T  9350113 atgaggaaaatattaatgtgaagaagatgttcataatagcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagat 9350014  T
Q  118 gcttgaagtagatattaaagacattaaaattcctccaaaaccttctccatatccaactgaaattattca 186  Q
    |||||||| | ||||| || | ||| |||| |||||||| || |||   ||||||| |||||| |||||    
T  9350013 gcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattca 9349945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 9255244 - 9255359
Alignment:
Q  18 atgaggaaaagaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaat 117  Q
    |||||||||| || ||||||||||| ||||||||| | || || ||||||||||||||||| ||   ||| ||||| |||||| | ||||| ||||| ||    
T  9255244 atgaggaaaataataatgtgaagaagatgttcataatagcattatggtgtatacaattgaaaccatgtgatcgtccctcaatgaataaagtgatagagat 9255343  T
Q  118 gcttgaagtagatatt 133  Q
    |||||||| |||||||    
T  9255344 gcttgaaggagatatt 9255359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 9097036 - 9097141
Alignment:
Q  28 gaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaatgcttgaagta 127  Q
    ||||| ||| ||||| ||| |||| |||||| | |||||||||||||||||||| ||||| || || ||||||   |||||| | ||||||||||| | |    
T  9097036 gaaaattgtaaagaagatgatcatggttgctctttggtgtatacaattgaagccaaatgatcgcccctcaatgagtaaagtagttgaaatgcttgacgga 9097135  T
Q  128 gatatt 133  Q
    ||||||    
T  9097136 gatatt 9097141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 9105217 - 9105314
Alignment:
Q  28 gaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaatgcttgaag 125  Q
    ||||| ||| ||||| ||| |||| |||||| | |||||||||||| ||||||| ||||| || || ||||||   |||||| | |||||||||||||    
T  9105217 gaaaattgtaaagaagatgatcatggttgctctttggtgtatacaactgaagccgaatgatcgcccctcaatgagtaaagtagttgaaatgcttgaag 9105314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 9159472 - 9159320
Alignment:
Q  32 aatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaatgcttgaagtagata 131  Q
    ||||||||||||||||||||| |||| || ||||||||||| || || || | ||| |||||| ||||| ||||||||||||| ||||| |||| | |||    
T  9159472 aatgtgaagaaaatgttcataattgcattatggtgtatacagttaaaaccaagtgatcgtcctgcaatgaacaaagtaatagagatgctcgaaggaaata 9159373  T
Q  132 ttaaagacattaaaattcctccaaaaccttctccatatccaactgaaattatt 184  Q
    || |  | ||| |||| |||||||||||||||   | ||||| ||||||||||    
T  9159372 ttgagaatattgaaatgcctccaaaaccttctttctgtccaaatgaaattatt 9159320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 15927411 - 15927527
Alignment:
Q  17 gatgaggaaaagaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaa 116  Q
    ||||||||||  || |||||||| ||||||||||||  ||| || |||||||| ||||| || || | ||| |||||||||||| ||| ||| ||||| |    
T  15927411 gatgaggaaagaaataatgtgaataaaatgttcataactgcattatggtgtattcaattaaaaccaagtgatcgtccttcaatgaacagagtgatagaga 15927510  T
Q  117 tgcttgaagtagatatt 133  Q
    ||||||||| |||||||    
T  15927511 tgcttgaaggagatatt 15927527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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