View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0362_low_8 (Length: 216)
Name: NF0362_low_8
Description: NF0362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0362_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 38160947 - 38160802
Alignment:
| Q |
48 |
tcgagtgagatgaagtacgtatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcaattctttgatttcttcctgccac |
147 |
Q |
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| T |
38160947 |
tcgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcagttctttgatttcttcctgccat |
38160848 |
T |
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| Q |
148 |
ttttcgacctgctccttgtgaatcctgcatatttcaaagttcaaag |
193 |
Q |
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| T |
38160847 |
ttttcgacctgctccttgtgaatcctgcatattggaaagttaaaag |
38160802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 38117120 - 38116976
Alignment:
| Q |
49 |
cgagtgagatgaagtacgtatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcaattctttgatttcttcctgccact |
148 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| | |
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| T |
38117120 |
cgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatt |
38117021 |
T |
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| Q |
149 |
tttcgacctgctccttgtgaatcctgcatatttcaaagttcaaag |
193 |
Q |
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|||| |||||||||||||||||||||| ||||| |||||| |||| |
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| T |
38117020 |
tttcaacctgctccttgtgaatcctgcttatttgaaagttaaaag |
38116976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 49004923 - 49004779
Alignment:
| Q |
49 |
cgagtgagatgaagtacgtatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcaattctttgatttcttcctgccact |
148 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||||| | |
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| T |
49004923 |
cgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgctcggagttctttgatttcttcctgccatt |
49004824 |
T |
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| Q |
149 |
tttcgacctgctccttgtgaatcctgcatatttcaaagttcaaag |
193 |
Q |
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|||| |||||||||||||||||||||| ||||| |||||| |||| |
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|
| T |
49004823 |
tttcaacctgctccttgtgaatcctgcttatttgaaagttaaaag |
49004779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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