View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0363_low_2 (Length: 380)
Name: NF0363_low_2
Description: NF0363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0363_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 30 - 337
Target Start/End: Original strand, 41765442 - 41765749
Alignment:
| Q |
30 |
attcaagccagtaaaagatgtatctattccagaaatcaatgttcgaaccggcataattgatgatcttcttggtggaccatcaccatctaagagatcaatt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41765442 |
attcaagccagtaaaagatgtatctattccagaaatcaatgttcgaaccggcataattgatgatcttcttggcggaccatcaccatctaagagatcaatt |
41765541 |
T |
|
| Q |
130 |
ttggctttcttcgctggtgggcttcatggggatattaggaatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41765542 |
ttggctttcttcgctggtgggcttcatggggatattaggaatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttc |
41765641 |
T |
|
| Q |
230 |
caaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatata |
329 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41765642 |
caaagggtgtgtcttactatgctatgttgagaaaaagcaagttttgtctttgtcctagtgggtgggaggttgcaagtccaagagtggtggaagcaatata |
41765741 |
T |
|
| Q |
330 |
cacaggtt |
337 |
Q |
| |
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|||||||| |
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| T |
41765742 |
cacaggtt |
41765749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 337
Target Start/End: Original strand, 41757359 - 41757666
Alignment:
| Q |
30 |
attcaagccagtaaaagatgtatctattccagaaatcaatgttcgaaccggcataattgatgatcttcttggtggaccatcaccatctaagagatcaatt |
129 |
Q |
| |
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||||||||| | ||| ||||||||||||||||||| |||| ||| |||||| | ||| ||| | || |||| || ||||||||||||||| ||||| || |
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| T |
41757359 |
attcaagcctgcaaaggatgtatctattccagaaaccaatcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatcagtt |
41757458 |
T |
|
| Q |
130 |
ttggctttcttcgctggtgggcttcatggggatattaggaatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttc |
229 |
Q |
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|||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41757459 |
ttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagatgaagatcttcaagttcacaagtaccttc |
41757558 |
T |
|
| Q |
230 |
caaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatata |
329 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757559 |
caaagggtgtgtcttactatgatatgttaagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatata |
41757658 |
T |
|
| Q |
330 |
cacaggtt |
337 |
Q |
| |
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|||||||| |
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|
| T |
41757659 |
cacaggtt |
41757666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 311
Target Start/End: Complemental strand, 26973235 - 26973139
Alignment:
| Q |
215 |
ttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaag |
311 |
Q |
| |
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|||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||| || |||||||| |
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| T |
26973235 |
ttcaaaagtatcttccaaagggtgtttcttactatgaaatgctgagaaagagcaagttctgtctctgtcctagtggttatgaggtggctagtccaag |
26973139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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