View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0363_low_3 (Length: 288)
Name: NF0363_low_3
Description: NF0363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0363_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 28294437 - 28294218
Alignment:
| Q |
41 |
tcatagggatattaaatcaagtaatgttatgttagactcaagtttcaatgttaagcttggtgattttgggttggctaagttaatggaccatgaacttggg |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28294437 |
tcatagggatattaaatcaagtaatgttatgttagactcaagtttcaatgtcaagcttggtgattttgggttggctaagttaatggaccatgaacttggg |
28294338 |
T |
|
| Q |
141 |
ccgcaaacaactgggctggccggaacatttggctatctagctccggaagatgtgagcacaggtagggcaagtaaagagtcagatgtgtatagtttcggga |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28294337 |
ccgcaaacaactgggctggccggaacatttggctatctagctccggaatatgtgagcacaggtagggcaagtaaagagtcagatgtgtatagttttggga |
28294238 |
T |
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| Q |
241 |
tagttgcgttggagataact |
260 |
Q |
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||||||| |||||||||||| |
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| T |
28294237 |
tagttgctttggagataact |
28294218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 42 - 259
Target Start/End: Complemental strand, 28304638 - 28304421
Alignment:
| Q |
42 |
catagggatattaaatcaagtaatgttatgttagactcaagtttcaatgttaagcttggtgattttgggttggctaagttaatggaccatgaacttgggc |
141 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28304638 |
catagggatattaaatcaagtaatgttatgctagattcaagttttaatgttaagcttggtgattttgggttggctaaattaatggaccatgaacttgggc |
28304539 |
T |
|
| Q |
142 |
cgcaaacaactgggctggccggaacatttggctatctagctccggaagatgtgagcacaggtagggcaagtaaagagtcagatgtgtatagtttcgggat |
241 |
Q |
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| T |
28304538 |
ctcaaacgacggggctggccggaacattcggctatctagctccagaatatgtgagtacaggaagggcgagtaaagagtcagatgtttatagttttgggat |
28304439 |
T |
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| Q |
242 |
agttgcgttggagataac |
259 |
Q |
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||||| || |||||||| |
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| T |
28304438 |
agttgtcttagagataac |
28304421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 42 - 253
Target Start/End: Complemental strand, 28264621 - 28264410
Alignment:
| Q |
42 |
catagggatattaaatcaagtaatgttatgttagactcaagtttcaatgttaagcttggtgattttgggttggctaagttaatggaccatgaacttgggc |
141 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| | |
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| T |
28264621 |
catagggatattaaatcaagtaatgttatgctagattctagtttcaatgttaagcttggtgactttgggttggctaagctaatggaccatgagattggac |
28264522 |
T |
|
| Q |
142 |
cgcaaacaactgggctggccggaacatttggctatctagctccggaagatgtgagcacaggtagggcaagtaaagagtcagatgtgtatagtttcgggat |
241 |
Q |
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| |||||||| | | | |||||||| || |||||| | ||||||||| || | || ||||||| | | || ||||||||||||||||||||||| ||| | |
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| T |
28264521 |
cccaaacaacagtggttgccggaaccttaggctatatggctccggaatatataagtacaggtaagactagcaaagagtcagatgtgtatagttttggggt |
28264422 |
T |
|
| Q |
242 |
agttgcgttgga |
253 |
Q |
| |
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||||| ||||| |
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| T |
28264421 |
tgttgccttgga |
28264410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 41 - 256
Target Start/End: Original strand, 28289114 - 28289329
Alignment:
| Q |
41 |
tcatagggatattaaatcaagtaatgttatgttagactcaagtttcaatgttaagcttggtgattttgggttggctaagttaatggaccatgaacttggg |
140 |
Q |
| |
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|||||| ||||| |||||||||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||| |
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| T |
28289114 |
tcatagagatatcaaatcaagtaatgttatgctagattctagtttcaatgttaagcttggtgactttgggttggctaaactaatggatcatgagattgga |
28289213 |
T |
|
| Q |
141 |
ccgcaaacaactgggctggccggaacatttggctatctagctccggaagatgtgagcacaggtagggcaagtaaagagtcagatgtgtatagtttcggga |
240 |
Q |
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|| |||||||| | | | |||||||| || |||||| | ||||| ||| || | || ||||||| ||| || ||||||||||||||||||||||| ||| |
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| T |
28289214 |
ccccaaacaacagtggttgccggaaccttaggctatttggctccagaatatataagtacaggtaaggctagcaaagagtcagatgtgtatagttttgggg |
28289313 |
T |
|
| Q |
241 |
tagttgcgttggagat |
256 |
Q |
| |
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| ||||| |||||||| |
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| T |
28289314 |
ttgttgccttggagat |
28289329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 28279250 - 28279359
Alignment:
| Q |
42 |
catagggatattaaatcaagtaatgttatgttagactcaagtttcaatgttaagcttggtgattttgggttggctaagttaatggaccatgaacttgggc |
141 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||| |
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| T |
28279250 |
catagggatattaaatcaagtaatgttatgttagattctagtttcaatgtcaagcttggtgattttgggttggctaaattaatagaccatgagcttgggc |
28279349 |
T |
|
| Q |
142 |
cgcaaacaac |
151 |
Q |
| |
|
| |||||||| |
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|
| T |
28279350 |
ctcaaacaac |
28279359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 43363693 - 43363761
Alignment:
| Q |
41 |
tcatagggatattaaatcaagtaatgttatgttagactcaagtttcaatgttaagcttggtgattttgg |
109 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| | |||| |||||||| |||||||||||| ||||| |
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| T |
43363693 |
tcatagggatataaaatcaagtaatgttatgttgtattcaaatttcaatgctaagcttggtgactttgg |
43363761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 28341933 - 28341866
Alignment:
| Q |
42 |
catagggatattaaatcaagtaatgttatgttagactcaagtttcaatgttaagcttggtgattttgg |
109 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||| ||| |||||||| ||| |||||||||||||| |
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| T |
28341933 |
catagagatattaagtcaagtaatgtaatgttagatgcaaatttcaatgctaaacttggtgattttgg |
28341866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 47871663 - 47871699
Alignment:
| Q |
81 |
agtttcaatgttaagcttggtgattttgggttggcta |
117 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
47871663 |
agtttcaatgcaaagcttggtgattttgggttggcta |
47871699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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