View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0364_low_11 (Length: 302)

Name: NF0364_low_11
Description: NF0364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0364_low_11
NF0364_low_11
[»] chr2 (3 HSPs)
chr2 (129-166)||(22482221-22482258)
chr2 (129-166)||(22482881-22482918)
chr2 (127-163)||(15285665-15285701)
[»] chr3 (3 HSPs)
chr3 (137-166)||(46753292-46753321)
chr3 (127-163)||(22242928-22242964)
chr3 (127-163)||(22243125-22243161)
[»] chr1 (1 HSPs)
chr1 (131-164)||(23729491-23729524)


Alignment Details
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 22482221 - 22482258
Alignment:
Q  129 aattttcgaaggtgtgcattagcatcctacacctattt 166  Q
    |||||| |||||||||||||||||||||||||||||||    
T  22482221 aattttagaaggtgtgcattagcatcctacacctattt 22482258  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 22482918 - 22482881
Alignment:
Q  129 aattttcgaaggtgtgcattagcatcctacacctattt 166  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  22482918 aattttagaaggtgtgcattagcatcctactcctattt 22482881  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 15285701 - 15285665
Alignment:
Q  127 tcaattttcgaaggtgtgcattagcatcctacaccta 163  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  15285701 tcaattttagaatgtgtgcattagcatcctacaccta 15285665  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 46753292 - 46753321
Alignment:
Q  137 aaggtgtgcattagcatcctacacctattt 166  Q
    ||||||||||||||||||||||||||||||    
T  46753292 aaggtgtgcattagcatcctacacctattt 46753321  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 22242928 - 22242964
Alignment:
Q  127 tcaattttcgaaggtgtgcattagcatcctacaccta 163  Q
    |||||||| |||| |||||||||||||||||||||||    
T  22242928 tcaattttagaagatgtgcattagcatcctacaccta 22242964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 22243161 - 22243125
Alignment:
Q  127 tcaattttcgaaggtgtgcattagcatcctacaccta 163  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  22243161 tcaattttagaaggtgtgcattagcatcatacaccta 22243125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 23729491 - 23729524
Alignment:
Q  131 ttttcgaaggtgtgcattagcatcctacacctat 164  Q
    |||| |||||||||||||||||||||||||||||    
T  23729491 ttttagaaggtgtgcattagcatcctacacctat 23729524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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