View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0364_low_12 (Length: 297)

Name: NF0364_low_12
Description: NF0364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0364_low_12
NF0364_low_12
[»] chr1 (1 HSPs)
chr1 (64-238)||(30618240-30618414)
[»] chr2 (3 HSPs)
chr2 (64-117)||(13486830-13486883)
chr2 (73-123)||(31482372-31482422)
chr2 (75-123)||(13133064-13133112)
[»] chr6 (1 HSPs)
chr6 (70-117)||(9606869-9606916)
[»] chr8 (1 HSPs)
chr8 (70-122)||(35620058-35620110)
[»] chr7 (1 HSPs)
chr7 (73-121)||(10293300-10293348)
[»] chr5 (2 HSPs)
chr5 (75-123)||(26498345-26498393)
chr5 (71-115)||(26619406-26619450)
[»] chr4 (1 HSPs)
chr4 (73-117)||(35268211-35268255)
[»] chr3 (3 HSPs)
chr3 (75-123)||(8838504-8838552)
chr3 (73-117)||(19432294-19432337)
chr3 (75-123)||(55312440-55312488)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 30618414 - 30618240
Alignment:
Q  64 atcttctactatccaagttggggatggttgacatttaccaacctccaacttgtgaggggaaaactgatagaattagttagttaataacaattacttgcat 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30618414 atcttctactatccaagttggggatggttgacatttaccaacctccaacttgtgaggggaaaactgatagaattagttagttaataacaattacttgcat 30618315  T
Q  164 agcaaataatctgtcttgttagttagaagttagtttctggtgcttgtttcacatagacatagtagttagcctatg 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30618314 agcaaataatctgtcttgttagttagaagttagtttctggtgcttgtttcacatagacatagtagttagcatatg 30618240  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 13486883 - 13486830
Alignment:
Q  64 atcttctactatccaagttggggatggttgacatttaccaacctccaacttgtg 117  Q
    ||||||| |||||||||||||||||| | || || |||||||||||||||||||    
T  13486883 atcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtg 13486830  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 31482422 - 31482372
Alignment:
Q  73 tatccaagttggggatggttgacatttaccaacctccaacttgtgagggga 123  Q
    ||||||||||||| || || ||||||||||| ||||||||||||| |||||    
T  31482422 tatccaagttgggtatagtagacatttaccaccctccaacttgtgggggga 31482372  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 13133064 - 13133112
Alignment:
Q  75 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 123  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||| |||||    
T  13133064 tccaagttggggatgttagacatctaccaccctccaacttgtgggggga 13133112  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 9606916 - 9606869
Alignment:
Q  70 tactatccaagttggggatggttgacatttaccaacctccaacttgtg 117  Q
    |||||||||||||||| ||| ||||||||| ||| |||||||||||||    
T  9606916 tactatccaagttgggaatgattgacatttgccatcctccaacttgtg 9606869  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 35620058 - 35620110
Alignment:
Q  70 tactatccaagttggggatggttgacatttaccaacctccaacttgtgagggg 122  Q
    |||||||||||||||||||| | || || ||||||||| ||||||||| ||||    
T  35620058 tactatccaagttggggatgttagatatctaccaaccttcaacttgtgggggg 35620110  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 10293300 - 10293348
Alignment:
Q  73 tatccaagttggggatggttgacatttaccaacctccaacttgtgaggg 121  Q
    |||||||||||||| || | || || |||||||||||||||||||||||    
T  10293300 tatccaagttggggttgttggatatataccaacctccaacttgtgaggg 10293348  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 26498345 - 26498393
Alignment:
Q  75 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 123  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||| |||||    
T  26498345 tccaagttggggatgttagacatctaccaccctccaacttgtgggggga 26498393  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 26619450 - 26619406
Alignment:
Q  71 actatccaagttggggatggttgacatttaccaacctccaacttg 115  Q
    |||||||||||||| |||| ||||||| || ||||||||||||||    
T  26619450 actatccaagttggagatgattgacatctatcaacctccaacttg 26619406  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 35268255 - 35268211
Alignment:
Q  73 tatccaagttggggatggttgacatttaccaacctccaacttgtg 117  Q
    |||||||||||||  |||| ||||||| |||||||||||||||||    
T  35268255 tatccaagttgggattggtagacatttgccaacctccaacttgtg 35268211  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 8838504 - 8838552
Alignment:
Q  75 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 123  Q
    ||||||||||||||| | || |||||||| ||||||||||||| |||||    
T  8838504 tccaagttggggatgttagatatttaccaccctccaacttgtgggggga 8838552  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 19432294 - 19432337
Alignment:
Q  73 tatccaagttggggatggttgacatttaccaacctccaacttgtg 117  Q
    |||||||||||||  |||||||||||||||||||| |||||||||    
T  19432294 tatccaagttgggattggttgacatttaccaacct-caacttgtg 19432337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 55312440 - 55312488
Alignment:
Q  75 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 123  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||| |||||    
T  55312440 tccaagttggggatgttagacatctaccaccctccaacttgtgggggga 55312488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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