View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0364_low_16 (Length: 252)
Name: NF0364_low_16
Description: NF0364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0364_low_16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 36 - 252
Target Start/End: Original strand, 34064365 - 34064582
Alignment:
| Q |
36 |
ggtggaactactccaccacattgtcggaaactctggatatgtttcccagccaccccaatagtcccaacaaccaatagcagtggatgtccctaatgatcat |
135 |
Q |
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| T |
34064365 |
ggtggaactactccaccacattgtcggaaactctggatttttttcccagccaccccaatagccccaacaaccaatagcagtggatgtccctaatgatcat |
34064464 |
T |
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| Q |
136 |
ccggatctttaatggtggaggcagatcaagaggtgtatctcta-gagtaaattagtaacctacatttatttgattatctacactcatttttataaatttg |
234 |
Q |
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| T |
34064465 |
caggatctttaatggtggaggcagatcaagaagtgtatctctaggagtaaattagtaacctacattcatttgattatctacaatcatttttataaatttg |
34064564 |
T |
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| Q |
235 |
attatcatttaatgtcgt |
252 |
Q |
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| T |
34064565 |
attatcatttaatgtcgt |
34064582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 49901340 - 49901383
Alignment:
| Q |
186 |
ttagtaacctacatttatttgattatctacactcatttttataa |
229 |
Q |
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| T |
49901340 |
ttagcaacctacattcatttgattatttacactcatttttataa |
49901383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 24831151 - 24831094
Alignment:
| Q |
181 |
gtaaattagtaacctacatttatttgattatctacactcatttttataaatttgatta |
238 |
Q |
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| T |
24831151 |
gtaagttagcaacctacatccacttgattatatacactcatttttataaatttgatta |
24831094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 93420 - 93449
Alignment:
| Q |
204 |
ttgattatctacactcatttttataaattt |
233 |
Q |
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| T |
93420 |
ttgattatctacactcatttttataaattt |
93449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 30805959 - 30806011
Alignment:
| Q |
181 |
gtaaattagtaacctacatttatttgattatctacactcatttttataaattt |
233 |
Q |
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|||| |||| ||||||||| | |||||||| ||||||||||||||||||||| |
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| T |
30805959 |
gtaagttagcaacctacatccacttgattatttacactcatttttataaattt |
30806011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 13293792 - 13293844
Alignment:
| Q |
181 |
gtaaattagtaacctacatttatttgattatctacactcatttttataaattt |
233 |
Q |
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|||| |||| |||||||||| | |||||||| ||||||| ||||||||||||| |
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| T |
13293792 |
gtaagttagcaacctacattcacttgattatttacactcttttttataaattt |
13293844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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