View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0364_low_24 (Length: 201)
Name: NF0364_low_24
Description: NF0364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0364_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 42945385 - 42945504
Alignment:
| Q |
1 |
tccataaactccccaagacaaattggacattctgtggctgcaaaactagtactactacctccagaaccataaacagctacagggatcttacgcaatgcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42945385 |
tccataaactccccaagacaaattggacattctgtggctgcaaaactagtactactacctccagaaccataaacagctacagggatcttacgcaatgcac |
42945484 |
T |
|
| Q |
101 |
ttttctttaaaccctatgat |
120 |
Q |
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||||||||||||||| |||| |
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| T |
42945485 |
ttttctttaaaccctttgat |
42945504 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41763182 - 41763260
Alignment:
| Q |
1 |
tccataaactcccc--aagacaaattggacattctgtggctgcaaaactagtactactacctccagaaccataaacagc |
77 |
Q |
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|||||||||||||| | |||||||| |||| | |||||| | ||||||||||| | |||||||| ||||||||||||| |
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| T |
41763182 |
tccataaactccccctatgacaaattcgacaatttgtggccgtaaaactagtaccattacctccaaaaccataaacagc |
41763260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 34171902 - 34171962
Alignment:
| Q |
17 |
gacaaattggacattctgtggctgcaaaactagtactactacctccagaaccataaacagc |
77 |
Q |
| |
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|||||||| |||| | |||||| | ||||||||||| | |||||||| ||||||||||||| |
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| T |
34171902 |
gacaaattcgacaatttgtggccgtaaaactagtaccattacctccaaaaccataaacagc |
34171962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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