View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0364_low_4 (Length: 331)
Name: NF0364_low_4
Description: NF0364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0364_low_4 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 43071151 - 43071327
Alignment:
| Q |
72 |
caaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggag |
170 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43071151 |
caaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggag |
43071250 |
T |
|
| Q |
171 |
aaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43071251 |
aaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggataagtg |
43071327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 1262441 - 1262264
Alignment:
| Q |
72 |
caaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa--tgaagga |
169 |
Q |
| |
|
||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1262441 |
caaagggcgaagagattttttcgagtaaaagcaatatgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaaatgaagga |
1262342 |
T |
|
| Q |
170 |
gaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1262341 |
gaaagaggtgaacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggataagtg |
1262264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 48849601 - 48849752
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa--tgaaggagaaagaggtggacatagataagtgtg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
48849601 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagatgagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataagtgtg |
48849700 |
T |
|
| Q |
196 |
gagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
48849701 |
gagtcaatttgggaatttgaggataattaatgagtcaaaacttggataagtg |
48849752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 26909806 - 26909926
Alignment:
| Q |
125 |
agaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataat |
222 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||| ||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
26909806 |
agaaggaataatgggagaggagaaaagagaacgttaaaaatgaaggagaaaaaggtgggcatggataagtgtggagtcaatctgggaattggaggataat |
26909905 |
T |
|
| Q |
223 |
taatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||||||||| ||| ||||||| |
|
|
| T |
26909906 |
----gagtcaaaacttgaataagtg |
26909926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 12742040 - 12741864
Alignment:
| Q |
72 |
caaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggag |
170 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12742040 |
caaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggag |
12741941 |
T |
|
| Q |
171 |
aaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12741940 |
aaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggataagtg |
12741864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 18355082 - 18355258
Alignment:
| Q |
72 |
caaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggag |
170 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18355082 |
caaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggag |
18355181 |
T |
|
| Q |
171 |
aaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18355182 |
aaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggataagtg |
18355258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 23348749 - 23348925
Alignment:
| Q |
72 |
caaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggag |
170 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23348749 |
caaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggag |
23348848 |
T |
|
| Q |
171 |
aaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23348849 |
aaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggataagtg |
23348925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 10328666 - 10328842
Alignment:
| Q |
72 |
caaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggag |
170 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10328666 |
caaagggcgaagagatttttttgagtaaaagcaatctaaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggag |
10328765 |
T |
|
| Q |
171 |
aaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10328766 |
aaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggataagtg |
10328842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 98 - 244
Target Start/End: Complemental strand, 9044128 - 9043981
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
9044128 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtgg |
9044029 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataa |
244 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9044028 |
agtcaatttgggaattggaggataattaatgagtcaaaacttggataa |
9043981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 7473258 - 7473434
Alignment:
| Q |
72 |
caaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggag |
170 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7473258 |
caaagggcgaagagatttttttgagtaaaagcaatctaaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggag |
7473357 |
T |
|
| Q |
171 |
aaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
7473358 |
aaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataactaatgagtcaaaacttggataagtg |
7473434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 30442342 - 30442492
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30442342 |
aaaagcaatctgaattccaacacataaagaaggaataatgagagtggagagaagagaactttaaaatgaaggagaaagaggtggacatcgataagtgtgg |
30442441 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
30442442 |
agtcaatttgggaattggaggataattaatgagtcaaaacttggaaaagtg |
30442492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 22009359 - 22009455
Alignment:
| Q |
122 |
taaagaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | |||| |||||||||| |||| | ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
22009359 |
taaagaaggaataatgggagaggagagaacagaaagttgaaaaggaaggagaaaaaggttggcatcgataagtgtggagtcaatttgggaattggag |
22009455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 19085182 - 19085241
Alignment:
| Q |
159 |
aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggagga |
218 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||||||||| | |||||||||||| |
|
|
| T |
19085182 |
aaaatggaggagaaagaggtgggtatcgataagtgtggagtcaatatgggaattggagga |
19085241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 19881880 - 19882056
Alignment:
| Q |
72 |
caaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggag |
170 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
19881880 |
caaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagataacttaaaaatgaaggag |
19881979 |
T |
|
| Q |
171 |
aaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881980 |
aaagaggtggacatcgataaatgtggagtcaatttgggaattggaggataattaatgagtcaaaatttggataagtg |
19882056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 37982678 - 37982530
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
37982678 |
aaaagcaatctgaattccaaaacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtgg |
37982579 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataag |
245 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37982578 |
agtcaatttgggaattggaggataattaatgagtcaaaacttggataag |
37982530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 53973081 - 53973231
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
53973081 |
aaaagcaatctgaattccaacacataaagaatgaataatgggagaggagagaagaaaacttaaaaatgaaggagaaagaggtggacatcgataagtgtgg |
53973180 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53973181 |
agtcaatttgagaattggaggataattaatgagtcaaaatttggataagtg |
53973231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 31685403 - 31685253
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
31685403 |
aaaagcaatttgaattccaacacataaagaaggaataatggaagaggagagaaaagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtgg |
31685304 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
31685303 |
agtcaatttgagaattggaggataattaatgagtcaaaacttgaataagtg |
31685253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 5658097 - 5657947
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
5658097 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcgataagtgtgg |
5657998 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5657997 |
agtcaatttgggaattggaggataattaatgagtcaaaacttggataagtg |
5657947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 31100667 - 31100817
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
31100667 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcgataagtgtgg |
31100766 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31100767 |
agtcaatttgggaattggaggataattaatgagtcaaaacttggataagtg |
31100817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 14677817 - 14677966
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14677817 |
aaaagcaatctgaatttcaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacat-gataagtgtgg |
14677915 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
14677916 |
agtcaatttgggaattggatgataattaatgagtcaaaacttggataagtg |
14677966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 33689093 - 33689215
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaac-ttaa-aatgaaggagaaagaggtggacatagataagtgtg |
195 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
33689093 |
aaaagcaatctgaattccaaaaagtaaagaaggaataatgggagaggagagaagagaacgttaacaatgaaggagaaagaggtgggtatggataagtgtg |
33689192 |
T |
|
| Q |
196 |
gagtcaatttaggaattggagga |
218 |
Q |
| |
|
|||||||| | | |||||||||| |
|
|
| T |
33689193 |
gagtcaatatggaaattggagga |
33689215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 33045226 - 33045376
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
33045226 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagacaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtgg |
33045325 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33045326 |
agtcaatttgggaattggaggataattaatgagtcaaaacttggataagtg |
33045376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 10092819 - 10092678
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
10092819 |
aaaagcaatttgaattccaacacataaagaaggaataatgggagaggagagaa-----cttaaaaatgaaggagaaagaggtggacatcgataagtgtgg |
10092725 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggata |
243 |
Q |
| |
|
||||||||| | ||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
10092724 |
agtcaatttggaaattggaggataactaatgaatcaaaacttggata |
10092678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 30908174 - 30908233
Alignment:
| Q |
159 |
aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggagga |
218 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||||||||| | ||||||||||| |
|
|
| T |
30908174 |
aaaatggaggagaaagaggtgggtatcgataagtgtggagtcaatatgagaattggagga |
30908233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 980 - 830
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
980 |
aaaagcaatttgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtgg |
881 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
880 |
agtcaatttgggaattgaatgataattaatgagtcaaaatttggataagtg |
830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 11429 - 11579
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
11429 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcaataagtgtgg |
11528 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
11529 |
agtcaatttgggaattggaggataatgaatgagtcaaaacttggataagtg |
11579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 29863156 - 29863306
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
29863156 |
aaaagcaatctgaattctaacacataaagaaggaataatgggagaggagataagagaactaaaaaatgaaggagaaagaggtggacatcgataagtgtgg |
29863255 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29863256 |
agtcaatttgggaattggaggataattaatgagtcaaaacttggataagtg |
29863306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 35387 - 35239
Alignment:
| Q |
98 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtgg |
196 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
35387 |
aaaagcaatctgaattccaactcataaagaaggaataatgggagaggagag--gagaacttaaaaatgaaggagaaaaaggtggacatcgataagtgtgg |
35290 |
T |
|
| Q |
197 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg |
247 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35289 |
agttaatttgggaattggaggataattaatgagtcaaaacttggataagtg |
35239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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