View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0364_low_5 (Length: 324)

Name: NF0364_low_5
Description: NF0364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0364_low_5
NF0364_low_5
[»] chr1 (6 HSPs)
chr1 (59-160)||(27488997-27489098)
chr1 (59-161)||(27481799-27481903)
chr1 (181-236)||(9316096-9316151)
chr1 (181-236)||(21814953-21815008)
chr1 (185-236)||(27048261-27048312)
chr1 (181-236)||(47294155-47294210)
[»] chr7 (6 HSPs)
chr7 (175-236)||(41542595-41542656)
chr7 (175-236)||(28442581-28442642)
chr7 (181-236)||(9701926-9701981)
chr7 (181-236)||(41454945-41455000)
chr7 (181-236)||(43364383-43364438)
chr7 (181-236)||(48455520-48455575)
[»] chr6 (7 HSPs)
chr6 (175-236)||(7826123-7826184)
chr6 (175-236)||(10800602-10800663)
chr6 (175-236)||(14118589-14118650)
chr6 (175-236)||(14122547-14122608)
chr6 (181-236)||(18765823-18765878)
chr6 (175-236)||(24908556-24908617)
chr6 (181-236)||(1051355-1051410)
[»] chr5 (2 HSPs)
chr5 (175-236)||(9335180-9335241)
chr5 (175-236)||(40821359-40821420)
[»] chr3 (5 HSPs)
chr3 (175-236)||(4675061-4675122)
chr3 (175-236)||(18866912-18866973)
chr3 (181-236)||(4501252-4501307)
chr3 (181-231)||(4506578-4506628)
chr3 (181-236)||(27900664-27900719)
[»] chr2 (3 HSPs)
chr2 (175-236)||(33033885-33033946)
chr2 (175-236)||(44611378-44611439)
chr2 (181-236)||(43669907-43669963)
[»] scaffold0045 (2 HSPs)
scaffold0045 (175-236)||(2771-2833)
scaffold0045 (175-236)||(9153-9215)
[»] chr8 (4 HSPs)
chr8 (181-243)||(44245932-44245994)
chr8 (181-236)||(9906939-9906994)
chr8 (193-236)||(38657391-38657434)
chr8 (181-222)||(5064045-5064086)
[»] scaffold0265 (1 HSPs)
scaffold0265 (181-236)||(17801-17856)
[»] chr4 (2 HSPs)
chr4 (181-236)||(13568165-13568220)
chr4 (181-236)||(667704-667759)
[»] scaffold0291 (1 HSPs)
scaffold0291 (181-236)||(1739-1794)


Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 27489098 - 27488997
Alignment:
Q  59 gttttaaataataatgattttcctcatttcaaatttttaatnnnnnnntgtgtttaagaacaatggtaactattgctttaagtggaaaggggtttgtaac 158  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  27489098 gttttaaataataatgattttcctcatttcaaatttttaataaaaaaatgtgtttaagaacaatggtaactattgctttaagtgcaaagcggtttgtaac 27488999  T
Q  159 ta 160  Q
    ||    
T  27488998 ta 27488997  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 27481903 - 27481799
Alignment:
Q  59 gttttaaataataatgattttcctcatttcaaatttttaatnnnnnnn--tgtgtttaagaacaatggtaactattgctttaagtggaaaggggtttgta 156  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  27481903 gttttaaataataatgattttcctcatttcaaatttttaataaaaaaaaatgtgtttaagaacaatggtaattattgctttaagtggaaagggatttgta 27481804  T
Q  157 actag 161  Q
    |||||    
T  27481803 actag 27481799  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 9316096 - 9316151
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||    
T  9316096 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacat 9316151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 21814953 - 21815008
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||    
T  21814953 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacat 21815008  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 27048261 - 27048312
Alignment:
Q  185 gtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  27048261 gtattctcggattagtgttggagatcctaattatcaattgatattatcacat 27048312  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 47294155 - 47294210
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    |||||||||||  ||||||||||||  || ||||||||||||||||||||| ||||    
T  47294155 atacgtattctaagattagtgttgcgaattctaattatcaattgatattatcacat 47294210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 41542595 - 41542656
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  41542595 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacat 41542656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 28442581 - 28442642
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||| ||||    
T  28442581 ctattcatatgtattctcggattagtgttgcatatcttaattatcaattgatattatcacat 28442642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 9701926 - 9701981
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||    
T  9701926 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacat 9701981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 41455000 - 41454945
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| |||||| |||||| ||| ||||||||||||||||||||| ||||    
T  41455000 atacgtattctaggattaatgttgcggattctaattatcaattgatattatcacat 41454945  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 43364383 - 43364438
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||| ||||||||||||||||| ||| ||||||||||| ||||||||| ||||    
T  43364383 atacgtactcttggattagtgttgcggattctaattatcaagtgatattatcacat 43364438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 48455520 - 48455575
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| ||||||||| ||| ||| ||||||||| ||||||||||| ||||    
T  48455520 atacgtattctcggattagtgatgcggattctaattatcgattgatattatcacat 48455575  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 7826123 - 7826184
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  7826123 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacat 7826184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 10800663 - 10800602
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  10800663 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacat 10800602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 14118650 - 14118589
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  14118650 ctattcatacatattctcggattagtgttgcagatcctaattatcaattgatattatcacat 14118589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 14122608 - 14122547
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  14122608 ctattcatacatattctcggattagtgttgcagatcctaattatcaattgatattatcacat 14122547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 18765823 - 18765878
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  18765823 atacgtattcttggattagtgttgcggattctaattatcaattgatattatcacat 18765878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 24908556 - 24908617
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||| ||||||| |||||||||||||| ||||||| ||| |||||||||||| ||||    
T  24908556 ctattcatatgtattctcggattagtgttgcaaatcctaactattaattgatattatcacat 24908617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 1051355 - 1051410
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    |||| |||||| |||||||| |||||||| ||||||||||||||||||||| ||||    
T  1051355 atacatattctaggattagttttgcagattctaattatcaattgatattatcacat 1051410  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 9335241 - 9335180
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||    
T  9335241 ctattcatacgtattctcggattagtgttgcatatcctaattatcaattgatattatcacat 9335180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 40821420 - 40821359
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  40821420 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacat 40821359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 4675061 - 4675122
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  4675061 ctattcatacgtattctcggattagtgttgcagatcttaattatcaattgatattatcacat 4675122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 18866912 - 18866973
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  18866912 ctattcatacgtattctcggattagtattgcagatcctaattatcaattgatattatcacat 18866973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 4501252 - 4501307
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||    
T  4501252 atacgtattctaggattagtgttgcggattctaattatcaattgatattatcacat 4501307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 4506578 - 4506628
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattat 231  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  4506578 atacgtattctaggattagtgttgcggattctaattatcaattgatattat 4506628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 27900664 - 27900719
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| ||||||||||||   || ||||||||||||||||||||| ||||    
T  27900664 atacgtattctcggattagtgttgtgtattctaattatcaattgatattatcacat 27900719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 33033885 - 33033946
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  33033885 ctattcatacatattctcggattagtgttgccgatcctaattatcaattgatattatcacat 33033946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 44611378 - 44611439
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||    
T  44611378 ctattcatatgtattctcggattagtgttgcaaatcctaattatcaattgatattatcacat 44611439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 43669907 - 43669963
Alignment:
Q  181 atacgtattcttggatta-gtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| |||||| ||||||| ||| ||||||||||||||||||||| ||||    
T  43669907 atacgtattctcggattaagtgttgcggattctaattatcaattgatattatcacat 43669963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 2833 - 2771
Alignment:
Q  175 ctattcatacgtattcttggatt-agtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| ||||    
T  2833 ctattcatacgtattctcggatttagtgttgcggatcctaattatcaattgatattatcacat 2771  T

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Target: scaffold0045; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 9215 - 9153
Alignment:
Q  175 ctattcatacgtattcttggatt-agtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| ||||    
T  9215 ctattcatacgtattctcggatttagtgttgcggatcctaattatcaattgatattatcacat 9153  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 44245994 - 44245932
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacattttcttc 243  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||| |||| ||||||    
T  44245994 atacgtattcttggattagtgttgcggattctaactatcaattgatattatcacatattcttc 44245932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 9906994 - 9906939
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||    
T  9906994 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacat 9906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 38657391 - 38657434
Alignment:
Q  193 ggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||||| ||| ||||||||||||||||||||| ||||    
T  38657391 ggattagtgttgcggattctaattatcaattgatattatcacat 38657434  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 5064086 - 5064045
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaat 222  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||    
T  5064086 atacgtattctcggattagtgttgcggattctaattatcaat 5064045  T

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Target: scaffold0265 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 17856 - 17801
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||    
T  17856 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacat 17801  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 13568165 - 13568220
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||    
T  13568165 atacgtattctaggattagtgttgcggattctaattatcaattgatattatcacat 13568220  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 667759 - 667704
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    ||||||||||| ||||||||||||  |||  |||||||||||||||||||| ||||    
T  667759 atacgtattctcggattagtgttgtggattataattatcaattgatattatcacat 667704  T

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Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 1794 - 1739
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacat 236  Q
    |||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||    
T  1794 atacgtatactcggattagtgttgcggattctaattatcaattgatattatcacat 1739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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