View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0364_low_6 (Length: 324)

Name: NF0364_low_6
Description: NF0364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0364_low_6
NF0364_low_6
[»] chr1 (6 HSPs)
chr1 (59-160)||(27488997-27489098)
chr1 (59-161)||(27481799-27481903)
chr1 (181-239)||(9316096-9316154)
chr1 (181-239)||(21814953-21815011)
chr1 (185-239)||(27048261-27048315)
chr1 (181-239)||(47294155-47294213)
[»] chr6 (7 HSPs)
chr6 (175-239)||(14118586-14118650)
chr6 (175-239)||(14122544-14122608)
chr6 (175-238)||(7826123-7826186)
chr6 (175-238)||(10800600-10800663)
chr6 (181-239)||(18765823-18765881)
chr6 (175-238)||(24908556-24908619)
chr6 (181-239)||(1051355-1051413)
[»] chr5 (2 HSPs)
chr5 (175-239)||(9335177-9335241)
chr5 (175-238)||(40821357-40821420)
[»] chr3 (5 HSPs)
chr3 (175-239)||(18866912-18866976)
chr3 (175-238)||(4675061-4675124)
chr3 (181-239)||(4501252-4501310)
chr3 (181-231)||(4506578-4506628)
chr3 (181-239)||(27900664-27900722)
[»] chr7 (6 HSPs)
chr7 (175-238)||(41542595-41542658)
chr7 (175-238)||(28442581-28442644)
chr7 (181-239)||(9701926-9701984)
chr7 (181-239)||(41454942-41455000)
chr7 (181-239)||(43364383-43364441)
chr7 (181-239)||(48455520-48455578)
[»] chr2 (3 HSPs)
chr2 (175-239)||(33033885-33033949)
chr2 (175-238)||(44611378-44611441)
chr2 (181-239)||(43669907-43669966)
[»] chr8 (4 HSPs)
chr8 (181-243)||(44245932-44245994)
chr8 (181-239)||(9906936-9906994)
chr8 (193-239)||(38657391-38657437)
chr8 (181-222)||(5064045-5064086)
[»] scaffold0045 (2 HSPs)
scaffold0045 (175-239)||(2768-2833)
scaffold0045 (175-239)||(9150-9215)
[»] scaffold0265 (1 HSPs)
scaffold0265 (181-239)||(17798-17856)
[»] chr4 (2 HSPs)
chr4 (181-239)||(13568165-13568223)
chr4 (181-239)||(667701-667759)
[»] scaffold0291 (1 HSPs)
scaffold0291 (181-239)||(1736-1794)
[»] scaffold0012 (1 HSPs)
scaffold0012 (181-239)||(202536-202594)


Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 27489098 - 27488997
Alignment:
Q  59 gttttaaataataatgattttcctcatttcaaatttttaatnnnnnnntgtgtttaagaacaatggtaactattgctttaagtggaaaggggtttgtaac 158  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  27489098 gttttaaataataatgattttcctcatttcaaatttttaataaaaaaatgtgtttaagaacaatggtaactattgctttaagtgcaaagcggtttgtaac 27488999  T
Q  159 ta 160  Q
    ||    
T  27488998 ta 27488997  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 27481903 - 27481799
Alignment:
Q  59 gttttaaataataatgattttcctcatttcaaatttttaatnnnnnnn--tgtgtttaagaacaatggtaactattgctttaagtggaaaggggtttgta 156  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  27481903 gttttaaataataatgattttcctcatttcaaatttttaataaaaaaaaatgtgtttaagaacaatggtaattattgctttaagtggaaagggatttgta 27481804  T
Q  157 actag 161  Q
    |||||    
T  27481803 actag 27481799  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 9316096 - 9316154
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  9316096 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9316154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 21814953 - 21815011
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  21814953 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 21815011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 27048261 - 27048315
Alignment:
Q  185 gtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||| |||||||    
T  27048261 gtattctcggattagtgttggagatcctaattatcaattgatattatcacatatt 27048315  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 47294155 - 47294213
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    |||||||||||  ||||||||||||  || ||||||||||||||||||||| |||||||    
T  47294155 atacgtattctaagattagtgttgcgaattctaattatcaattgatattatcacatatt 47294213  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 14118650 - 14118586
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  14118650 ctattcatacatattctcggattagtgttgcagatcctaattatcaattgatattatcacatatt 14118586  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 14122608 - 14122544
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  14122608 ctattcatacatattctcggattagtgttgcagatcctaattatcaattgatattatcacatatt 14122544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 7826123 - 7826186
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 238  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  7826123 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 7826186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 10800663 - 10800600
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 238  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  10800663 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 10800600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 18765823 - 18765881
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  18765823 atacgtattcttggattagtgttgcggattctaattatcaattgatattatcacatatt 18765881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 24908556 - 24908619
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 238  Q
    ||||||||| ||||||| |||||||||||||| ||||||| ||| |||||||||||| ||||||    
T  24908556 ctattcatatgtattctcggattagtgttgcaaatcctaactattaattgatattatcacatat 24908619  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 1051355 - 1051413
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    |||| |||||| |||||||| |||||||| ||||||||||||||||||||| |||||||    
T  1051355 atacatattctaggattagttttgcagattctaattatcaattgatattatcacatatt 1051413  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 9335241 - 9335177
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||    
T  9335241 ctattcatacgtattctcggattagtgttgcatatcctaattatcaattgatattatcacatatt 9335177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 40821420 - 40821357
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 238  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  40821420 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 40821357  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 18866912 - 18866976
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||    
T  18866912 ctattcatacgtattctcggattagtattgcagatcctaattatcaattgatattatcacatatt 18866976  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 4675061 - 4675124
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 238  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||    
T  4675061 ctattcatacgtattctcggattagtgttgcagatcttaattatcaattgatattatcacatat 4675124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 4501252 - 4501310
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  4501252 atacgtattctaggattagtgttgcggattctaattatcaattgatattatcacatatt 4501310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 4506578 - 4506628
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattat 231  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  4506578 atacgtattctaggattagtgttgcggattctaattatcaattgatattat 4506628  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 27900664 - 27900722
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| ||||||||||||   || ||||||||||||||||||||| |||||||    
T  27900664 atacgtattctcggattagtgttgtgtattctaattatcaattgatattatcacatatt 27900722  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 41542595 - 41542658
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 238  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  41542595 ctattcatatgtattctcggattagtgttgcagatcctaattatcaattgatattatcacatat 41542658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 28442581 - 28442644
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 238  Q
    ||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||    
T  28442581 ctattcatatgtattctcggattagtgttgcatatcttaattatcaattgatattatcacatat 28442644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 9701926 - 9701984
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  9701926 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9701984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 41455000 - 41454942
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| |||||| |||||| ||| ||||||||||||||||||||| |||||||    
T  41455000 atacgtattctaggattaatgttgcggattctaattatcaattgatattatcacatatt 41454942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 43364383 - 43364441
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||| ||||||||||||||||| ||| ||||||||||| ||||||||| |||||||    
T  43364383 atacgtactcttggattagtgttgcggattctaattatcaagtgatattatcacatatt 43364441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 48455520 - 48455578
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| ||||||||| ||| ||| ||||||||| ||||||||||| |||||||    
T  48455520 atacgtattctcggattagtgatgcggattctaattatcgattgatattatcacatatt 48455578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 33033885 - 33033949
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  33033885 ctattcatacatattctcggattagtgttgccgatcctaattatcaattgatattatcacatatt 33033949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 44611378 - 44611441
Alignment:
Q  175 ctattcatacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatat 238  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||    
T  44611378 ctattcatatgtattctcggattagtgttgcaaatcctaattatcaattgatattatcacatat 44611441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 43669907 - 43669966
Alignment:
Q  181 atacgtattcttggatta-gtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| |||||| ||||||| ||| ||||||||||||||||||||| |||||||    
T  43669907 atacgtattctcggattaagtgttgcggattctaattatcaattgatattatcacatatt 43669966  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 44245994 - 44245932
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatattcttc 243  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||| |||||||||||    
T  44245994 atacgtattcttggattagtgttgcggattctaactatcaattgatattatcacatattcttc 44245932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 9906994 - 9906936
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  9906994 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 9906936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 38657391 - 38657437
Alignment:
Q  193 ggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  38657391 ggattagtgttgcggattctaattatcaattgatattatcacatatt 38657437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 5064086 - 5064045
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaat 222  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||    
T  5064086 atacgtattctcggattagtgttgcggattctaattatcaat 5064045  T

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Target: scaffold0045 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 2833 - 2768
Alignment:
Q  175 ctattcatacgtattcttggatt-agtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||    
T  2833 ctattcatacgtattctcggatttagtgttgcggatcctaattatcaattgatattatcacatatt 2768  T

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Target: scaffold0045; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 9215 - 9150
Alignment:
Q  175 ctattcatacgtattcttggatt-agtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||    
T  9215 ctattcatacgtattctcggatttagtgttgcggatcctaattatcaattgatattatcacatatt 9150  T

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Target: scaffold0265 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 17856 - 17798
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  17856 atacgtattctcggattagtgttgcggattctaattatcaattgatattatcacatatt 17798  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 13568165 - 13568223
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  13568165 atacgtattctaggattagtgttgcggattctaattatcaattgatattatcacatatt 13568223  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 667759 - 667701
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| ||||||||||||  |||  |||||||||||||||||||| |||||||    
T  667759 atacgtattctcggattagtgttgtggattataattatcaattgatattatcacatatt 667701  T

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Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 1794 - 1736
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    |||||||| || ||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  1794 atacgtatactcggattagtgttgcggattctaattatcaattgatattatcacatatt 1736  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 202536 - 202594
Alignment:
Q  181 atacgtattcttggattagtgttgcagatcctaattatcaattgatattattacatatt 239  Q
    ||||||||||| ||||||| ||||| ||| |||||| ||||||| |||||| |||||||    
T  202536 atacgtattctcggattagcgttgcggattctaattctcaattggtattatcacatatt 202594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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