View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0364_low_7 (Length: 323)

Name: NF0364_low_7
Description: NF0364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0364_low_7
NF0364_low_7
[»] chr6 (28 HSPs)
chr6 (81-228)||(27702584-27702732)
chr6 (81-198)||(26627726-26627843)
chr6 (81-198)||(26733703-26733820)
chr6 (83-169)||(26650492-26650578)
chr6 (83-169)||(26756460-26756546)
chr6 (85-169)||(26807072-26807156)
chr6 (84-169)||(26963732-26963817)
chr6 (81-143)||(27714256-27714318)
chr6 (100-169)||(27588951-27589020)
chr6 (81-145)||(27660701-27660765)
chr6 (91-169)||(26629008-26629086)
chr6 (91-169)||(26639748-26639826)
chr6 (91-169)||(26734984-26735062)
chr6 (91-169)||(26745714-26745792)
chr6 (83-156)||(31288535-31288608)
chr6 (84-149)||(27423114-27423179)
chr6 (81-125)||(27419478-27419522)
chr6 (81-167)||(26889871-26889957)
chr6 (85-169)||(25078331-25078407)
chr6 (174-228)||(26639902-26639957)
chr6 (174-228)||(26745868-26745923)
chr6 (180-228)||(26629167-26629216)
chr6 (199-228)||(26650681-26650710)
chr6 (180-228)||(26735143-26735192)
chr6 (199-228)||(26756649-26756678)
chr6 (199-228)||(26963922-26963951)
chr6 (180-228)||(27423016-27423065)
chr6 (113-169)||(27506986-27507042)
[»] chr4 (8 HSPs)
chr4 (81-164)||(18675035-18675118)
chr4 (81-164)||(18685608-18685691)
chr4 (81-164)||(18693090-18693173)
chr4 (81-164)||(18719565-18719648)
chr4 (81-164)||(18726862-18726945)
chr4 (83-164)||(18683352-18683433)
chr4 (81-164)||(18650916-18650999)
chr4 (81-169)||(5082456-5082544)
[»] scaffold0349 (1 HSPs)
scaffold0349 (81-143)||(17626-17688)
[»] chr8 (1 HSPs)
chr8 (81-143)||(29270149-29270211)
[»] scaffold0003 (3 HSPs)
scaffold0003 (84-149)||(64184-64249)
scaffold0003 (81-125)||(67841-67885)
scaffold0003 (180-228)||(64298-64347)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 27702732 - 27702584
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaagaccgctaatgta 180  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  27702732 agatgaatggttttacaagtaagatctttatacttcgaaagcataaatggttttaatcataatctttatgaaagattatttgaaaaagaccgttaatgta 27702633  T
Q  181 aatatgtagcttttgt-ccacaggtcaaattagatacaaacttcatctt 228  Q
    ||  |||||||||| | ||||||||||||||||||||||||||||||||    
T  27702632 aacgtgtagcttttatcccacaggtcaaattagatacaaacttcatctt 27702584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 26627726 - 26627843
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaagaccgctaatgta 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26627726 agatgaatggtgttacaagtaagatccttatacttcgaaagcataaatgcttttaatcataatctttatgaaagatcatttgaaaaagaccgttaatgta 26627825  T
Q  181 aatatgtagcttttgtcc 198  Q
    |||  |||||||||||||    
T  26627826 aatgagtagcttttgtcc 26627843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 26733703 - 26733820
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaagaccgctaatgta 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26733703 agatgaatggtgttacaagtaagatccttatacttcgaaagcataaatgcttttaatcataatctttatgaaagatcatttgaaaaagaccgttaatgta 26733802  T
Q  181 aatatgtagcttttgtcc 198  Q
    |||  |||||||||||||    
T  26733803 aatgagtagcttttgtcc 26733820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 26650492 - 26650578
Alignment:
Q  83 atgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    ||||||| ||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||| |||||| ||||    
T  26650492 atgaatgttgttacaagtaagatccttatactttgaaaccataaatgcttttaatcataatctttatgaaagatcttttgaagaaga 26650578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 26756460 - 26756546
Alignment:
Q  83 atgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    ||||||| ||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||| |||||| ||||    
T  26756460 atgaatgttgttacaagtaagatccttatactttgaaaccataaatgcttttaatcataatctttatgaaagatcttttgaagaaga 26756546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 26807072 - 26807156
Alignment:
Q  85 gaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    ||||| ||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||||| |||||||||||    
T  26807072 gaatgttgttacaagtaagatccttatactttgaaagcataaatgcttttagtcataatctttgtgaaagatcttttgaaaaaga 26807156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 26963732 - 26963817
Alignment:
Q  84 tgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    |||||| ||||||||||||||||||||||||| |||| || | ||| | ||||||||||||||||||||||||| |||||||||||    
T  26963732 tgaatgttgttacaagtaagatccttatactttgaaaccacaaatgctcttaatcataatctttatgaaagatcttttgaaaaaga 26963817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 27714318 - 27714256
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataat 143  Q
    |||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||    
T  27714318 agatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 27714256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 27589020 - 27588951
Alignment:
Q  100 taagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    ||||||||| |||||| ||||||||| ||| ||||||||||||||||| ||||||||| |||||||||||    
T  27589020 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaaga 27588951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 27660765 - 27660701
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatct 145  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||    
T  27660765 agatgaatgttgttacaagtaagatccttatactttgaaagaataaatgcttttaatcataatct 27660701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 26629008 - 26629086
Alignment:
Q  91 tgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    ||||||||||||||| ||||| ||| |||| |||| | | ||||||||||||||||||||||||||| | |||||||||    
T  26629008 tgttacaagtaagattcttatcctttgaaaccataaacgcttttaatcataatctttatgaaagatcttctgaaaaaga 26629086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 26639748 - 26639826
Alignment:
Q  91 tgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    ||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||| ||| || || ||| |||||||    
T  26639748 tgttacaagtaagatccttatactttgaaaacataaatgcttttaatcataatctttgtgagaggtcttttaaaaaaga 26639826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 26734984 - 26735062
Alignment:
Q  91 tgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    ||||||||||||||| ||||| ||| |||| |||| | | ||||||||||||||||||||||||||| | |||||||||    
T  26734984 tgttacaagtaagattcttatcctttgaaaccataaacgcttttaatcataatctttatgaaagatcttctgaaaaaga 26735062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 26745714 - 26745792
Alignment:
Q  91 tgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    ||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||| ||| || || ||| |||||||    
T  26745714 tgttacaagtaagatccttatactttgaaaacataaatgcttttaatcataatctttgtgagaggtcttttaaaaaaga 26745792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 31288535 - 31288608
Alignment:
Q  83 atgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagat 156  Q
    ||||||| |||||  |||||||| ||||||||| ||||||||| ||| |||||||||||| |||||||||||||    
T  31288535 atgaatgttgttatgagtaagatacttatactttgaaagcataaatgcttttaatcataaactttatgaaagat 31288608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 27423179 - 27423114
Alignment:
Q  84 tgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttat 149  Q
    |||||| ||||||||||||||||||||||||| |||| |||| ||  ||||||| |||||||||||    
T  27423179 tgaatgttgttacaagtaagatccttatactttgaaaccataaatacttttaattataatctttat 27423114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 27419522 - 27419478
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcata 125  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  27419522 agatgaatgctgttacaagtaagatccttatactttgaaagcata 27419478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 26889871 - 26889957
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaa 167  Q
    |||||||||| |||||| ||||||||| |||||||  |||||||| |||  | ||||||||||||||||  |||||| |||| ||||    
T  26889871 agatgaatggagttacaggtaagatccctatacttataaagcataaatgcgtgtaatcataatctttattgaagatcttttggaaaa 26889957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 25078331 - 25078407
Alignment:
Q  85 gaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    ||||| ||||||||||||||||||||||        ||||| ||| |||||||| |||||||| ||||||||| |||||||||||    
T  25078331 gaatgttgttacaagtaagatccttata--------gcataaatgcttttaatcttaatctttgtgaaagatcttttgaaaaaga 25078407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 26639902 - 26639957
Alignment:
Q  174 taatgtaaatatgtagcttttgtcca-caggtcaaattagatacaaacttcatctt 228  Q
    |||||||||| ||| ||||| ||||| |||||||||||||||||| ||||||||||    
T  26639902 taatgtaaatgtgttgctttcgtccaacaggtcaaattagatacacacttcatctt 26639957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 26745868 - 26745923
Alignment:
Q  174 taatgtaaatatgtagcttttgtcca-caggtcaaattagatacaaacttcatctt 228  Q
    |||||||||| ||| ||||| ||||| |||||||||||||||||| ||||||||||    
T  26745868 taatgtaaatgtgttgctttcgtccaacaggtcaaattagatacacacttcatctt 26745923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 26629167 - 26629216
Alignment:
Q  180 aaatatgtagcttttgtcca-caggtcaaattagatacaaacttcatctt 228  Q
    |||| |||| |||||||||| |||||||||||||||||||| ||||||||    
T  26629167 aaatctgtatcttttgtccaacaggtcaaattagatacaaatttcatctt 26629216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 26650681 - 26650710
Alignment:
Q  199 acaggtcaaattagatacaaacttcatctt 228  Q
    ||||||||||||||||||||||||||||||    
T  26650681 acaggtcaaattagatacaaacttcatctt 26650710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 26735143 - 26735192
Alignment:
Q  180 aaatatgtagcttttgtcca-caggtcaaattagatacaaacttcatctt 228  Q
    |||| |||| |||||||||| |||||||||||||||||||| ||||||||    
T  26735143 aaatctgtatcttttgtccaacaggtcaaattagatacaaatttcatctt 26735192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 26756649 - 26756678
Alignment:
Q  199 acaggtcaaattagatacaaacttcatctt 228  Q
    ||||||||||||||||||||||||||||||    
T  26756649 acaggtcaaattagatacaaacttcatctt 26756678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 26963922 - 26963951
Alignment:
Q  199 acaggtcaaattagatacaaacttcatctt 228  Q
    ||||||||||||||||||||||||||||||    
T  26963922 acaggtcaaattagatacaaacttcatctt 26963951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 27423065 - 27423016
Alignment:
Q  180 aaatatgtagcttttgtcca-caggtcaaattagatacaaacttcatctt 228  Q
    |||| |||| |||||||||| |||||||| ||||||||||||||||||||    
T  27423065 aaatgtgtatcttttgtccaacaggtcaatttagatacaaacttcatctt 27423016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 27507042 - 27506986
Alignment:
Q  113 cttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    |||||||| ||||  || |||||||||||||||||||||| |||| |||||| ||||    
T  27507042 cttcgaaatcataagtgcttttaatcataatctttatgaaggatcttttgaataaga 27506986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 18675118 - 18675035
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaa 164  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||||||| ||||||    
T  18675118 agatgaatgttgttacaagtaagatccttatactttgaaagcataaatggttttaatcataatctctatgaaagatcttttgaa 18675035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 18685691 - 18685608
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaa 164  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||||||| ||||||    
T  18685691 agatgaattttgttacaagtaagatccttatactttgaaagcataaatggttttaatcataatctctatgaaagatcttttgaa 18685608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 18693173 - 18693090
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaa 164  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||| ||||||||||| ||||||    
T  18693173 agatgaatgttgttacaagtaagatccttataccttgaaagcataaatggttttaatcataatctctatgaaagatcttttgaa 18693090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 18719648 - 18719565
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaa 164  Q
    ||||||||  ||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| ||||||||||| ||||||    
T  18719648 agatgaatattgttacaagtaagatccttatactttgaaagcaaaaatggttttaatcataatctctatgaaagatcttttgaa 18719565  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 18726945 - 18726862
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaa 164  Q
    ||||||||  ||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| ||||||||||| ||||||    
T  18726945 agatgaatattgttacaagtaagatccttatactttgaaagcaaaaatggttttaatcataatctctatgaaagatcttttgaa 18726862  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 18683433 - 18683352
Alignment:
Q  83 atgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaa 164  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| ||  ||||||||||||| | ||||||||||| ||||||    
T  18683433 atgaatgttgttacaagtaagatccttatactttgaaagcataaattgttttaatcataatttctatgaaagatcttttgaa 18683352  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 18650999 - 18650916
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaa 164  Q
    ||||||||| |||| |||||||||||||||||||| ||||| ||| ||| |||||||||||||||  |||||||||| ||||||    
T  18650999 agatgaatgttgttgcaagtaagatccttatactttgaaagtataaatggttttaatcataatctcaatgaaagatcttttgaa 18650916  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 5082456 - 5082544
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttatgaaagatcatttgaaaaaga 169  Q
    ||||||| | ||||||||||||||||||||| ||| ||||| ||| ||| ||||||||||| ||| |  |||||||| ||| |||||||    
T  5082456 agatgaacgctgttacaagtaagatccttatgctttgaaagtataaatgcttttaatcatagtctctgggaaagatcctttcaaaaaga 5082544  T

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Target: scaffold0349 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 17626 - 17688
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataat 143  Q
    |||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||    
T  17626 agatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 17688  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 29270211 - 29270149
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataat 143  Q
    |||||||||||||||||| ||||||||||||||||||||||| || ||| || ||||||||||    
T  29270211 agatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttataatcataat 29270149  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 64184 - 64249
Alignment:
Q  84 tgaatggtgttacaagtaagatccttatacttcgaaagcatatatgattttaatcataatctttat 149  Q
    |||||| ||||||||||||||||||||||||| |||| |||| ||  ||||||| |||||||||||    
T  64184 tgaatgttgttacaagtaagatccttatactttgaaaccataaatacttttaattataatctttat 64249  T

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Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 67841 - 67885
Alignment:
Q  81 agatgaatggtgttacaagtaagatccttatacttcgaaagcata 125  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  67841 agatgaatgctgttacaagtaagatccttatactttgaaagcata 67885  T

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Target: scaffold0003; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 64298 - 64347
Alignment:
Q  180 aaatatgtagcttttgtcca-caggtcaaattagatacaaacttcatctt 228  Q
    |||| |||| |||||||||| |||||||| ||||||||||||||||||||    
T  64298 aaatgtgtatcttttgtccaacaggtcaatttagatacaaacttcatctt 64347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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