View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0364_low_8 (Length: 311)
Name: NF0364_low_8
Description: NF0364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0364_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 53 - 306
Target Start/End: Original strand, 2181477 - 2181730
Alignment:
| Q |
53 |
gaagagagacaaccatctgcagcaacaagtaaatctcctacaatctcaataacctctccagttttcacaactttagcctttactatgacaggaccctttt |
152 |
Q |
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| T |
2181477 |
gaagagagacaaccatctgcagcaacaagcaaatctcctacaatctcaataacctctccagttttcacaactttagcctttactatgacaggaccctttt |
2181576 |
T |
|
| Q |
153 |
catttgcaacatggaaagaaagaaaaatatgaccccataaaaatatttgtggtggaagtgattcatagagaacaccatgaagatcaccccaatgtgctgc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2181577 |
catttgcaacatggaaagaaagaaaaatatgaccccataaaaatatttgtggtggaagtgattcatagagaacaccatgaagatcaccccaatgtgctgc |
2181676 |
T |
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| Q |
253 |
tctgaagtttaaactttcatctcttgtcaatgtcctattaaccttcatctcact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2181677 |
tctgaagtttaaactttcatctcttgtcaatgtcctattaaccttcttctcact |
2181730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 306
Target Start/End: Complemental strand, 2184797 - 2184541
Alignment:
| Q |
53 |
gaagagagacaaccatctgcagcaacaagtaaatctcctacaatctcaataacctctccagttttcacaactttagcctttactatgacagga---ccct |
149 |
Q |
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|||||||||||||||||||| |||||||| ||||| |||||||||||||| | ||||||||||| | |||| |||||||||| ||||||| | |||| |
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| T |
2184797 |
gaagagagacaaccatctgctgcaacaagcaaatcccctacaatctcaatgatctctccagtttgaagaactatagcctttacaatgacagaagttccct |
2184698 |
T |
|
| Q |
150 |
tttcatttgcaacatggaaagaaagaaaaatatgaccccataaaaatatttgtggtggaagtgattcatagagaacaccatgaagatcaccccaatgtgc |
249 |
Q |
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|||||||||||||||||||||| | |||| ||||||||||||||||| ||||||||| | || |||||||||||| ||||||||||| || ||||| | |
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| T |
2184697 |
tttcatttgcaacatggaaagagacaaaatgatgaccccataaaaatacttgtggtggcaatgcatcatagagaacaacatgaagatcagcctaatgtac |
2184598 |
T |
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| Q |
250 |
tgctctgaagtttaaactttcatctcttgtcaatgtcctattaaccttcatctcact |
306 |
Q |
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|||| | ||||| ||||| ||||||||| ||||||||| ||| |||||| ||||||| |
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| T |
2184597 |
tgctgtcaagttgaaactctcatctcttatcaatgtccaattcaccttcttctcact |
2184541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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