View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0364_low_9 (Length: 306)
Name: NF0364_low_9
Description: NF0364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0364_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 35035884 - 35036010
Alignment:
| Q |
109 |
cttgggaaacttagccgacaaatacggagccatcttcaccgtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgt |
208 |
Q |
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| T |
35035884 |
cttgggaaacttagccgacaaatacggagccatcttcacagtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgt |
35035983 |
T |
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| Q |
209 |
ttcactgtaaacgacaaagcctttgct |
235 |
Q |
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| T |
35035984 |
ttcactgtaaacgacaaagcctttgct |
35036010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 35019689 - 35019811
Alignment:
| Q |
113 |
ggaaacttagccgacaaatacggagccatcttcaccgtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttca |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| ||||| || ||||||| ||||| | | ||||||||| | |
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| T |
35019689 |
ggaaacttagccgacaaatacggacccatcttcaccgttcgtttaggtgttcacaaaaccttagtagtaagcagttatgaaatggtgaaacagtgtttta |
35019788 |
T |
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| Q |
213 |
ctgtaaacgacaaagcctttgct |
235 |
Q |
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| T |
35019789 |
ccgtaaacgacaaaacttttgct |
35019811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 35029780 - 35029903
Alignment:
| Q |
113 |
ggaaacttagccgacaaatacggagccat-cttcaccgtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttc |
211 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||| |||||||| ||||||| ||||| | | ||| |||||| |
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| T |
35029780 |
ggaaacttagccgacaaatacggacccatccttcaccgttcgtttaggtgttcacaaaaccttagttgtaagcagttatgaaatggtgaaacaatgtttc |
35029879 |
T |
|
| Q |
212 |
actgtaaacgacaaagcctttgct |
235 |
Q |
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|| ||||| |||||| | |||||| |
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| T |
35029880 |
accgtaaatgacaaaacttttgct |
35029903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 235
Target Start/End: Original strand, 35044056 - 35044171
Alignment:
| Q |
120 |
tagccgacaaatacggagccatcttcaccgtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaa |
219 |
Q |
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||||||| ||||||||| | ||||||||| | ||||| |||||||| ||| ||||| | |||||||| ||||| || | ||| || ||||||||||| |
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| T |
35044056 |
tagccgataaatacggacctatcttcacctttcgttttggtgttcacaaaacactagttataagcagttgtgaaatggcgaaacaatgcttcactgtaaa |
35044155 |
T |
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| Q |
220 |
cgacaaagcctttgct |
235 |
Q |
| |
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||| | |||||||||| |
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| T |
35044156 |
cgatagagcctttgct |
35044171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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