View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0365-Insertion-1 (Length: 962)
Name: NF0365-Insertion-1
Description: NF0365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365-Insertion-1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 708; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 8 - 921
Target Start/End: Complemental strand, 2362127 - 2361219
Alignment:
| Q |
8 |
cttttatggcggcgctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2362127 |
cttttatggcggcgctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
2362028 |
T |
|
| Q |
108 |
ttagaaaaggaatggcatctcctattgtgaacacccctaacaatcgcatcaactcttgtaaagcttttatacatctttgcgcttcttcctcgttcgccgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2362027 |
ttagaaaaggaatggcatctcctattgtgaacacccctaacaatcgcatcaactcttgtaaagcttttatacatctttgcgcttcttcctcgttcgccac |
2361928 |
T |
|
| Q |
208 |
attcgtagcaccaaaatatcgtttcccaaccagcattggaagaacaatgttgaaacttaattgagtaaaccattgctttaactccaccaacgcgtagttt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361927 |
attcgtagcaccaaaatatcgtttcccaaccagcactggaagaacaatgttgaaacttaattgagtaaaccattgctttaactccaccaacgcgtagttt |
2361828 |
T |
|
| Q |
308 |
gatgactcgttctttttactaaaccaaacattgaagagctctttaatccacgcctgaacttctgaggtatgaaaatattgttgttgttcgacatgcctat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361827 |
gatgactcgttctttttactaaaccaaacattgaagagctctttaatccacgcctgaacttctgaggtatgaaaatattgttgttgttcgacatgcctat |
2361728 |
T |
|
| Q |
408 |
ggctgaggatctctgaagttgcaatcttccttacttggcgccaacaagaaccatagggtgctaacacaaacatggcaccattgtaacccaaaatgttgag |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
2361727 |
ggctgaggatctctgaagttgcaatcttccttacttggcgccaacaagaaccatagggtgctaacgcaaacatggcaccattgtaaccc-aaatgttgag |
2361629 |
T |
|
| Q |
508 |
ttgcttcaagttttagggcgattggatattgctaagtcaattttttgtgaaacatttccttttgccatttcccaattgctaacaacccaaagcacgtttg |
607 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2361628 |
ttgcttcaag-tttagggcgattggatattgccaagtcaa-tttttgtgaaacatt--cctttgccatttcccaattgctaacaa-ccaaagcacgttt- |
2361535 |
T |
|
| Q |
608 |
ggaaccaagcttaatagtgaacaaagggtccatatttatcagccaaggcacctaaggttctatgaggtgattgtgaagatcttaatagtggggagtgacc |
707 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||| | |||||| |
|
|
| T |
2361534 |
ggaaccaagcttaatagtgaac-aagggtccatatttatcagccaatgcacctaaggttctatgaggtttttgtgaattttttaatagttgtaggtgacc |
2361436 |
T |
|
| Q |
708 |
aagtattgggccatgccccttgaactataggagcctctttgctat-ggaaactttgtaggaacgataaagaaac-aaaaagaaaacaag-atattgaaac |
804 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
2361435 |
aagtatt-ggccatgccccttgaactataggagcctctttgctatgggaaactttgtaggaacgataaagaaacaaaaaagaaaacaagaatattgaaaa |
2361337 |
T |
|
| Q |
805 |
gagtgctactgaggtgacactagatagg-aatccagaaccaaatccattttattagg-aaggaaaagctccgatggcccagtggggaatgagagaagaat |
902 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| || |
|
|
| T |
2361336 |
gagtgctactgaagtgacactagataggaaatcaagaaccaaatccattttattaggtaaggaaaagctccgatggcctagtggggatggatagaag-at |
2361238 |
T |
|
| Q |
903 |
ttgagtttgttacatgaaa |
921 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
2361237 |
ttgagtttgtagcatgaaa |
2361219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 869
Target Start/End: Complemental strand, 2366734 - 2365874
Alignment:
| Q |
8 |
cttttatggcggcgctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
107 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2366734 |
cttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
2366635 |
T |
|
| Q |
108 |
ttagaaaaggaatggcatctcctattgtgaacacccctaacaatcgcatcaactcttgtaaagcttttatacatctttgcgcttcttcctcgttcgccgc |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||| ||||||||||||| | | |
|
|
| T |
2366634 |
ttagtaaaggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctttgcccttcttcctcgttgatcac |
2366535 |
T |
|
| Q |
208 |
attcgtag---caccaaaatatcgtttcccaaccagcattggaagaacaatgttgaaacttaattgagtaaaccattgctttaactccaccaacgcgtag |
304 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| | |||||||||| ||||| |
|
|
| T |
2366534 |
attcgtaggatgaccaaaatattgtttcccaaccagcattggaagaacaatattgaaactcaattgagttaaccattgcttcatctccaccaacacgtag |
2366435 |
T |
|
| Q |
305 |
tttgatgactcgttctttttactaaaccaaacattgaagagctctttaatccacgcctgaacttctgaggtatgaaaatattgttgttgttcgacatgcc |
404 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||| || |||||| || ||||||||| |||||||||||| ||| ||| |
|
|
| T |
2366434 |
tttgatgactcattctttttactaaaccaaacatcgaagagctctttaatccaccgttgcacttctaagatatgaaaatgttgttgttgttcaacacgcc |
2366335 |
T |
|
| Q |
405 |
tatggctgaggatctctgaagttgcaatcttccttacttggcgccaacaagaaccatagggtgctaacacaaacatggcaccattgtaacccaaaatgtt |
504 |
Q |
| |
|
|| | |||| || ||||||||||| ||||| |||| || || || ||||||||| |||||| ||| ||| | || ||||||||| | | ||||| |
|
|
| T |
2366334 |
gattggtgagcatttctgaagttgctatctttcttatttcacggtaataagaaccattgggtgcaaacccaagaaaagctccattgtaagtc-atatgtt |
2366236 |
T |
|
| Q |
505 |
gagttgcttcaagttttagggcgattggatattgctaagtcaattttttgtgaaacatttccttttgccatttcccaattgctaacaacccaaagcacgt |
604 |
Q |
| |
|
| |||||| | |||||||||| |||||||||| ||||||| |||| |||||||||| | |||||||||||||||||||||| || ||||||||||| |
|
|
| T |
2366235 |
tatatgcttc-acctttagggcgagtggatattgccaagtcaa-ttttggtgaaacatt--cctttgccatttcccaattgctaagaa-ccaaagcacgt |
2366141 |
T |
|
| Q |
605 |
ttgggaaccaagcttaatagtgaacaaagggtccatatttatcagccaaggcacctaaggttctatgaggtgattgtgaagatcttaatagtggggagtg |
704 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2366140 |
tt-ggaaccaatcttaatagtgaac-aagggtccatatttatcagccaatgcacctaaggttctatgaggtgattgtgaagatcttaatagtgggaggtg |
2366043 |
T |
|
| Q |
705 |
accaagtattgggccatgccccttgaactataggagcctctttgctatg-gaaactttgtaggaacgataaagaaacaaa-aagaaaacaaga-tattga |
801 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
2366042 |
accaagtatt-ggccatgccccttgaactataggatcctctttgctatgagaaactttgtaggaacgataaagaaacaaacaataaaacaagagtattga |
2365944 |
T |
|
| Q |
802 |
aacgagtgctactgaggtgacactagatagg-aatccagaaccaaatccattttattagg-aaggaaaag |
869 |
Q |
| |
|
|| ||||||| || ||| |||||| |||| |||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
2365943 |
aaatagtgctagtgtagtggcactagttaggaaatcaagaaccaaatccattttattaggtaaggaaaag |
2365874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 40 - 283
Target Start/End: Complemental strand, 2356406 - 2356163
Alignment:
| Q |
40 |
taaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccattttagaaaaggaatggcatctcctattgtgaac |
139 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||||| || ||||||||||||||||||||||||| || || | ||||||| |||||||| | ||||| |
|
|
| T |
2356406 |
taaaatcatgtccaattccttagaagtttttttcatagctttcacatggccaccaaaatcaaaccgttctaaacaaggaatagcatctcccaccgtgaat |
2356307 |
T |
|
| Q |
140 |
acccctaacaatcgcatcaactcttgtaaagcttttatacatctttgcgcttcttcctcgttcgccgcattcgtagcaccaaaatatcgtttcccaacca |
239 |
Q |
| |
|
||| | ||| |||| | || | || |||||| ||||| |||||||||||| ||| | | ||||| |||||||||||||||| |||||||| | |
|
|
| T |
2356306 |
tgccccatcaaacgcaagatttcctctacagctttgatacacttttgcgcttctttctcatcgagctcattcatagcaccaaaatatcgcttcccaacaa |
2356207 |
T |
|
| Q |
240 |
gcattggaagaacaatgttgaaacttaattgagtaaaccattgc |
283 |
Q |
| |
|
||| ||||| |||||||||||| | || | | ||||||||||| |
|
|
| T |
2356206 |
tcatcggaagtacaatgttgaaattcaactcaataaaccattgc |
2356163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 2349793 - 2349606
Alignment:
| Q |
8 |
cttttatggcggcgctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
107 |
Q |
| |
|
||||||||||| |||| | |||| ||||||||||||| | ||||| ||| |||||||| | | ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
2349793 |
cttttatggcgatgctccttcaaccactcacctaaaatttcgtccatttccgtagaagtttcatccatggccttcatatgaccaccaaaatcaaaccatt |
2349694 |
T |
|
| Q |
108 |
ttagaaaaggaatggcatctcctattgtgaacacccctaacaatcgcatcaactcttgtaaagcttttatacatctttgcgcttcttc |
195 |
Q |
| |
|
||| | ||||||| ||||||| | |||| ||||| ||||| ||||| | ||| | |||||||| | || |||||| |||||||| |
|
|
| T |
2349693 |
ttaaacaaggaataacatctcccaccgtgattaccccgaacaaacgcataatctccttcaaagctttcacacttctttgagcttcttc |
2349606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 2338750 - 2338656
Alignment:
| Q |
8 |
cttttatggcggcgctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaa |
102 |
Q |
| |
|
||||||||||| ||||| | |||| ||||| | |||||||||||||| || || |||||| ||||||||| |||||||| |||||||||||||| |
|
|
| T |
2338750 |
cttttatggcgacgctccttcaaccactcatcaaaaatcttgtccaactccttggaagtttctttcatggtcttcacataaccaccaaaatcaaa |
2338656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 312
Target Start/End: Complemental strand, 2306220 - 2306125
Alignment:
| Q |
217 |
accaaaatatcgtttcccaaccagcattggaagaacaatgttgaaacttaattgagtaaaccattgctttaactccaccaacgcgtagtttgatga |
312 |
Q |
| |
|
||||||||||| ||||||||| | |||| ||||||| |||||||| |||| || ||||||||||| | ||||| || ||| ||||||||||||| |
|
|
| T |
2306220 |
accaaaatatcttttcccaacaaccattcgaagaaccatgttgaatgttaaatgtgtaaaccattgatccaactctactaacacgtagtttgatga |
2306125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 476 - 750
Target Start/End: Complemental strand, 2355976 - 2355711
Alignment:
| Q |
476 |
aacatggcaccattgtaacccaaaatgttgagttgcttcaagttttagggcgattggatattgctaagtcaattttttgtgaaacatttccttttgccat |
575 |
Q |
| |
|
|||||||| ||||||||| ||||| |||| |||||| ||||||| ||| ||| |||| ||||| | ||||| ||| |||||||||| | || ||||| |
|
|
| T |
2355976 |
aacatggctccattgtaagccaaa-tgttcagttgcaacaagttt-aggacgagtggaaattgcaacgtcaaatttg-gtgaaacattcc--ttcgccat |
2355882 |
T |
|
| Q |
576 |
ttcccaattgctaacaacccaaagcacgtttgggaaccaagcttaatagtgaacaaagggtccatatttatcagccaaggcacctaaggttctatgaggt |
675 |
Q |
| |
|
|||| ||||||||| ||| |||||| ||||| ||||||| || || |||||||| |||||||||||||||||| || ||||||| |||||||| ||| |
|
|
| T |
2355881 |
ttccgaattgctaagtacc-aaagcatttttgg-aaccaagtttgatggtgaacaa-gggtccatatttatcagctaaatcacctaaagttctatgtggt |
2355785 |
T |
|
| Q |
676 |
gattgtgaagatcttaatagtggggagtgaccaagtattgggccatgccccttgaactataggagcctctttgct |
750 |
Q |
| |
|
| || |||| |||| | |||| ||||||||||||| |||||||| || ||||||||||| |||||||| |
|
|
| T |
2355784 |
gctttggaagcctttaacaatgggaggtgaccaagtatt-ggccatgcaccagccactataggagcttctttgct |
2355711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 2306429 - 2306337
Alignment:
| Q |
8 |
cttttatggcggcgctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatca |
100 |
Q |
| |
|
|||| |||||| |||||| |||| ||||| | | |||||| ||||| || || |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
2306429 |
ctttcatggcgatgctctttcaaccactcatcaacaatcttatccaactccttggaagtttctttcatggccttcacataaccaccaaaatca |
2306337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 2349535 - 2349447
Alignment:
| Q |
272 |
gtaaaccattgctttaactccaccaacgcgtagtttga------tgactcgttctttttactaaaccaaacattgaagagctctttaat |
354 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||| |||||| |||||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
2349535 |
gtaaaccattgcttcaaatccaccaacatatagtttgacggatatgactctttctttttgctataccaaacatcgaagagctctttaat |
2349447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 7e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 35 - 354
Target Start/End: Complemental strand, 41342008 - 41341688
Alignment:
| Q |
35 |
tcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccattttagaaaaggaatg-gcatctcctatt |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | | ||| | || | |
|
|
| T |
41342008 |
tcacctaaaatcttgtccaattctttagaaaaaaatttcattgccttcacatggccaccaaaatcaaaccattttagaaaagggaagagcaccacccacc |
41341909 |
T |
|
| Q |
134 |
gtgaacacccctaacaatcgcatcaactcttgtaaagcttttatacatctttgcgcttcttcctcgttcgccgcattcgtagcaccaaaatatcgtttcc |
233 |
Q |
| |
|
||||||||||||||||| || | || ||||| |||||||| |||||| |||| ||||||||| || || |||||||||| ||||||||||| |||| |
|
|
| T |
41341908 |
gtgaacacccctaacaaacgtaacatctcttccaaagctttcatacatttttgttcttcttccttgtcaaccacattcgtagctccaaaatatcgcttcc |
41341809 |
T |
|
| Q |
234 |
caaccagcattggaagaacaatgttgaaacttaattgagtaaaccattgctttaactccaccaacgcgtagtttgatgactcgttctttttactaaacca |
333 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||||||||||| ||||| || || ||||||||| | ||||||||||||| ||||| | ||||| |||| |
|
|
| T |
41341808 |
caaccaacattggaagaacaatgtttttactcaattgagtaaaacattgtttcaagtccaccaacacatagtttgatgacttgttctctctactacacca |
41341709 |
T |
|
| Q |
334 |
aacattgaagagctctttaat |
354 |
Q |
| |
|
||||||| ||| ||||||||| |
|
|
| T |
41341708 |
aacattgtagacctctttaat |
41341688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 731 - 783
Target Start/End: Complemental strand, 41339979 - 41339926
Alignment:
| Q |
731 |
actataggagcctctttgctatg-gaaactttgtaggaacgataaagaaacaaa |
783 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | |||| ||||||||||||| |
|
|
| T |
41339979 |
actataggagcctctttgctatgagaaactttggatgaactataaagaaacaaa |
41339926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 9e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 21 - 859
Target Start/End: Complemental strand, 4303879 - 4303043
Alignment:
| Q |
21 |
gctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccattttagaaaaggaat |
120 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||| ||||| | || | ||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4303879 |
gctcctccaacaaatcacctataatcttgtccatctctttggtagcttttttcatggccttcacatggcccccaaaatcaaaccattttaaaaaaggaag |
4303780 |
T |
|
| Q |
121 |
ggcatctcctattgtgaacacccctaacaatcgcatcaactcttgtaaagcttttatacatctttgcgcttcttcctcgttcgccgcattcgtagcacca |
220 |
Q |
| |
|
|||||||| | |||||||||||| | ||| |||| || ||||| || |||||||| |||| ||| ||||||||| || |||| |||| ||| |
|
|
| T |
4303779 |
agcatctcccactgtgaacacccccatcaaacgcagcatctcttttatagcttttacacatatttctacttcttccttgtcgataacatttgtagaaccg |
4303680 |
T |
|
| Q |
221 |
aaatatcgtttcccaaccagcattggaagaacaatgttgaaacttaattgagtaaaccattgctttaactccaccaacgcgtagtttgatgactc---gt |
317 |
Q |
| |
|
|||||||| || ||||||| || ||||||||| | || | | | |||||||||||||||||||| | |||||||| | || ||||||||||| || |
|
|
| T |
4303679 |
aaatatcgctttccaaccaacaatggaagaaccaagtctatattcaattgagtaaaccattgcttgacctccaccatcaaatattttgatgactcgttgt |
4303580 |
T |
|
| Q |
318 |
tctttttactaaaccaaacattgaagagctctttaatccacgcctgaacttctgaggtatgaaaatattgttgttgttcgacatgcctatggctgaggat |
417 |
Q |
| |
|
||| ||||| | ||||||||||| |||||||||||||| | | ||||| | | | || || |||| | | || || || || ||| ||||| |
|
|
| T |
4303579 |
tctctttacgacaccaaacattgtagagctctttaatcgaagttcgaactaccatgacacgataaggttgtagcttctccacctggtgattgctaaggat |
4303480 |
T |
|
| Q |
418 |
ctctgaagttgcaatcttccttacttggcgccaacaagaaccatagggtgctaacacaaacatggcaccattgtaacccaaaatgttgagttgcttcaag |
517 |
Q |
| |
|
|||| || ||| ||| || ||| || |||| || ||| ||||||||| ||| | ||||||||| ||||||||| | | ||||||||||| |||||| |
|
|
| T |
4303479 |
ctctaaatttgtaattttttttatttcgcgcaaataaggaccatagggagcttgaaaaaacatggctccattgtaagtc-atatgttgagttgtttcaag |
4303381 |
T |
|
| Q |
518 |
ttttagggcgattggatattgctaagtcaattttttgtgaaacatttccttttgccatttcccaattgctaacaacccaaagcacgtttgggaaccaagc |
617 |
Q |
| |
|
| ||||||||| ||| ||||| ||||||| |||| |||||||||| | | |||||||||||||| || | | |||||||| || |||||||| |
|
|
| T |
4303380 |
-tgtagggcgatcggaaattgccaagtcaa-ttttggtgaaacatt--cctcagccatttcccaattacttagca-ccaaagca-tttctcgaaccaagt |
4303287 |
T |
|
| Q |
618 |
ttaatagtgaacaaagggtccatatttatcagccaaggcacctaaggttctatgaggtgattgtgaagatcttaatagtggggagtgaccaagtattggg |
717 |
Q |
| |
|
|| || ||||| ||| ||||||||| | |||||||| ||||||||||||||||||||| ||||||| | |||||| | ||||||||||||| || |
|
|
| T |
4303286 |
ttgattgtgaataaa-ggtccatatgtgtcagccaatgcacctaaggttctatgaggtccttgtgaacctaacaatagttgaaggtgaccaagtatt-gg |
4303189 |
T |
|
| Q |
718 |
ccatgccccttgaactataggagcctctttgctatg-gaaactttgtaggaacgataaagaaacaaaa-agaaaacaag-atattgaaacgagtgctact |
814 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || ||| ||||| | ||||||||||||||||||| | |||||||| |||| |||| || ||||| | |
|
|
| T |
4303188 |
ccatgccccttgaactatgggagcctctttgcattgagaagctttggaagaacgataaagaaacaaaatataaaacaagaatatagaaaagaatgctaat |
4303089 |
T |
|
| Q |
815 |
gaggtgacactagata-ggaatccagaaccaaatccattttattag |
859 |
Q |
| |
|
| | || ||||| || |||||| | |||||||||||||| ||||| |
|
|
| T |
4303088 |
gtgatggtactagttagggaatcaaaaaccaaatccatttaattag |
4303043 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 5805544 - 5805644
Alignment:
| Q |
8 |
cttttatggcggcgctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccatt |
107 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||||| | |||||||| ||||||||| | ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5805544 |
cttttatggcggcgctcctttaacatctcacctaaaatttcatccaattccttagaagtttcattcatggcctttacatgaccaccaaaatcaaaccatt |
5805643 |
T |
|
| Q |
108 |
t |
108 |
Q |
| |
|
| |
|
|
| T |
5805644 |
t |
5805644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 272 - 355
Target Start/End: Original strand, 5805808 - 5805897
Alignment:
| Q |
272 |
gtaaaccattgctttaactccaccaacgcgtagtttgatg------actcgttctttttactaaaccaaacattgaagagctctttaatc |
355 |
Q |
| |
|
|||||||||||||| || ||||||||| | |||||||||| | ||||||||||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
5805808 |
gtaaaccattgcttcaagtccaccaacacatagtttgatggatttgattcgttcttttttctagaccaaatattgaagagctctttaatc |
5805897 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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