View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0365-Insertion-11 (Length: 285)
Name: NF0365-Insertion-11
Description: NF0365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365-Insertion-11 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 30508862 - 30508615
Alignment:
| Q |
8 |
gtcacaacagaagcaacaatattataagaaaatcatttcagtttgaacatgttcatattcacctcactgtcatcttccaaaagcacttattggtacaaat |
107 |
Q |
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| T |
30508862 |
gtcacaactgaagcaacaatattataagaaaagcatttcagtttgaacatgttcatattcacctcactgtcatcttccaaaagtacttattggtacaaat |
30508763 |
T |
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| Q |
108 |
tacaatcatctggattattctcaattttggatgacaatatatcctgcatatgcttcttcnnnnnnntatattctgagatcaaaatcactatcacatagcc |
207 |
Q |
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| T |
30508762 |
tacaatcatctggattattctcaattttggatgacaatatatcctgcatatgcttcttcaaaaaaatatatcctgagatcaaaatcactatcacatagcc |
30508663 |
T |
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| Q |
208 |
atacaactatgagtgcacgttggcaatgacaagcaattagagttcaat |
255 |
Q |
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| T |
30508662 |
atacaactatgagtgcacgttggcaatggcaagcaattagagttcaat |
30508615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 31985144 - 31985104
Alignment:
| Q |
215 |
tatgagtgcacgttggcaatgacaagcaattagagttcaat |
255 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||| |
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| T |
31985144 |
tatgagtgtacgttggcagtgacaagcaattagagttcaat |
31985104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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