View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0365-Insertion-2 (Length: 713)
Name: NF0365-Insertion-2
Description: NF0365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 279 - 690
Target Start/End: Complemental strand, 1158147 - 1157740
Alignment:
| Q |
279 |
gtcaagattaaacaaattttttaacaattcgtttgccaatgacatttcaatttgtgctagcctagtgtgcacaaactaaatttagcaaaggatctttaag |
378 |
Q |
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| T |
1158147 |
gtcaagattgaacaagtttcttaacaattcttttgtcaatgacatttcaatttgtgctagcctagtgtgcacaaactaaatttagcaaaggatctttaag |
1158048 |
T |
|
| Q |
379 |
aggcatattcttattcatgaatctcttccatttttacaatttgattgatgaattagctaccacgagaattgggtgctaaatgttaggtataacttgaggg |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1158047 |
aggcatattcttattcatgaatctcttccatttttacaatttgattgatgaattagctaccacgagaattgggtgctaaatgttaggtataacttgaggg |
1157948 |
T |
|
| Q |
479 |
gctgtgttcaactaaagtaaaaccttttaaaataggaaatgtaacaaaatctacaatctaatgtaaattaaaatggatgattttgtgggttgtctcttcc |
578 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1157947 |
gctgtgttcaactaaagtaaaaccttttaaaatcggaaatgtaacaaaatctacaatctaatgtaaattaaaatggatgattttgtgggttgtctcttcc |
1157848 |
T |
|
| Q |
579 |
ttttgggggcactagggaacacagtggatgcagttggacataatgcatgtatccacttattgcaaagggattggtggcaatccacttcttatggcacccc |
678 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |
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| T |
1157847 |
tttt-ggggcacta-ggaacacagtggatgcagttggacataatgcatgtatccacttattgcaaa-ggattgttggcaatccacttcttatggca-ccc |
1157752 |
T |
|
| Q |
679 |
cactacgtacct |
690 |
Q |
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|||||||||||| |
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| T |
1157751 |
cactacgtacct |
1157740 |
T |
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