View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0365-Insertion-4 (Length: 630)
Name: NF0365-Insertion-4
Description: NF0365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 177 - 626
Target Start/End: Original strand, 36956284 - 36956731
Alignment:
| Q |
177 |
agctgacattgttcttcaattatgataatttgatgggttgatttgttgaataatgtatttgtatgatatgatttactatttt-ttgacgacgtaattagt |
275 |
Q |
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| T |
36956284 |
agctgacattgttcttcaattatgataatttgatgggttgatttgttgaataatgtatttgtatgatatgatttactatttttttgacgacgtaattagt |
36956383 |
T |
|
| Q |
276 |
aatatggagtataaaactaaaattacttatcagatttagcattgattttgaaagatttgttgatgatcacaaaatggaatagatgatttgattttttgtt |
375 |
Q |
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| T |
36956384 |
aatatggagtataaaactaaaattacttatcagatttagcattgattttgaaagattttttgatgatcacaaaatggaatagatgatttgattttttgtt |
36956483 |
T |
|
| Q |
376 |
tgcctaattgcttattttagatgatagaattgtaatgtgttgtcttaatatcttttgttgatcaataatttgtttttgtgatatttttacataatgcatt |
475 |
Q |
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| T |
36956484 |
tgcctaattgcttattttagatgatagaattgtaatgtgttgtcttaatatcttttgttgatcaacaatttgtttttgtgata-ttttacataatgcatt |
36956582 |
T |
|
| Q |
476 |
cttaattgtccgtggtgtttatagtaatttgacctattttgttttgtttttgcatatattaattgacgagcgaaaatttgcttttgttatatgtctattt |
575 |
Q |
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| T |
36956583 |
cttaattgtccgtggtg-ttatagtaatttgacctattttgttttgtttttgcatatattaattgatgagcg-aaatttgcttttgttatatgtctattt |
36956680 |
T |
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| Q |
576 |
ttggagctgagcagcgtaggtttgatcagttatgtgtatgatatccctaaa |
626 |
Q |
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| T |
36956681 |
ctggagctgagcagcgtaggtttgatcagttatgtgtatgatatccataaa |
36956731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 180 - 626
Target Start/End: Original strand, 36970626 - 36971067
Alignment:
| Q |
180 |
tgacattgttcttcaattatgataatttgatgggttgatttgttgaataatgtatttgtatgatatgatttactattttttgacgacgtaattagtaata |
279 |
Q |
| |
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|||||||||||| ||||| |||| | |||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||||||||||||||| |
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| T |
36970626 |
tgacattgttct-caattttgatcaattgatgggttgatttgttgaataatggattagtatgatatgatttactatttagtt--gacgtaattagtaata |
36970722 |
T |
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| Q |
280 |
tggagtataaaactaaaattacttatcagatttagcattgattttgaaagatttgttgatgatcacaaaatggaatagatgatttgattttttgttt-gc |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||| ||||||||||||||||| ||| || |
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| T |
36970723 |
tggagtataaaactaaaattacttatcagatttagcattgattttgcatgattagttgatgatcataaaatggaagagatgatttgattttttttttggc |
36970822 |
T |
|
| Q |
379 |
ctaattgcttattttagatgatagaattgtaatgtgttgtcttaatatcttttgttgatcaataatttgtttttgtgatatttttacat-aatgcattct |
477 |
Q |
| |
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| T |
36970823 |
ctaattgcttattttaaatgatagaattggaatgtgttgtcctaatttcttttgttgatcaacaatt--tttttgtgata-ttttacatgaatgcattct |
36970919 |
T |
|
| Q |
478 |
taattgtccgtggtgtttatagtaatttgacctattttgttttgtttttgcatatattaattgacgagcgaaaatttgcttttgttatatgtctattttt |
577 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||| | |
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| T |
36970920 |
taattgtctgtggtg-ttatagtaatttgacctattttgttttgtttttgcatatattaatcgatgagcg-aaattttcttttgttatatgtctatttct |
36971017 |
T |
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| Q |
578 |
ggag-ctgagcagcgtaggtttgatcagttatgtgtatgatatccctaaa |
626 |
Q |
| |
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|||| |||||||| |||||||||||| |||||||| ||||||||| |||| |
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| T |
36971018 |
ggagcctgagcagtgtaggtttgatcggttatgtgcatgatatccataaa |
36971067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 36956150 - 36956187
Alignment:
| Q |
8 |
gatcatacccgcagccccactctcgctgtcaaggtaat |
45 |
Q |
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| T |
36956150 |
gatcatacccgcagccccactctcgctgtcaaggtaat |
36956187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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