View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0365-Insertion-5 (Length: 566)

Name: NF0365-Insertion-5
Description: NF0365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0365-Insertion-5
NF0365-Insertion-5
[»] chr4 (8 HSPs)
chr4 (228-484)||(10426677-10426932)
chr4 (135-230)||(10427623-10427718)
chr4 (136-230)||(9199750-9199845)
chr4 (136-197)||(9199512-9199573)
chr4 (515-566)||(10426285-10426336)
chr4 (179-230)||(9201332-9201384)
chr4 (136-197)||(12094864-12094925)
chr4 (136-197)||(24257703-24257764)
[»] chr7 (5 HSPs)
chr7 (262-463)||(4410741-4410938)
chr7 (136-230)||(20077317-20077412)
chr7 (136-230)||(4407779-4407872)
chr7 (143-224)||(30061499-30061581)
chr7 (232-260)||(4407898-4407926)
[»] chr8 (5 HSPs)
chr8 (135-230)||(26981034-26981130)
chr8 (136-230)||(26083903-26083998)
chr8 (136-225)||(5334273-5334363)
chr8 (136-193)||(42932716-42932773)
chr8 (134-166)||(7496756-7496788)
[»] chr6 (3 HSPs)
chr6 (135-227)||(31442516-31442609)
chr6 (136-222)||(20915980-20916067)
chr6 (136-205)||(7867948-7868018)
[»] chr5 (2 HSPs)
chr5 (136-225)||(6697935-6698025)
chr5 (173-230)||(9045160-9045218)
[»] chr3 (4 HSPs)
chr3 (161-230)||(11582599-11582669)
chr3 (133-189)||(2241513-2241569)
chr3 (134-212)||(39484801-39484881)
chr3 (135-205)||(15291460-15291530)
[»] chr2 (3 HSPs)
chr2 (136-207)||(38996518-38996590)
chr2 (135-207)||(22625385-22625458)
chr2 (136-205)||(28125536-28125606)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 228 - 484
Target Start/End: Complemental strand, 10426932 - 10426677
Alignment:
Q  228 taggttcattgctaccttcttaacatgtgacttgatgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatcct 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10426932 taggttcattgctaccttcttaacatgtgacttgatgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatcct 10426833  T
Q  328 tggtagcttctcctatgtgcggctgaagacttatctgatgcatatttccaaatcctatcaacaccattgtatatttattaattcagcacattggaattga 427  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10426832 tggtagcttctcctttgcgcggctgaagacttatctgatgcatatttccaaatcctatcaacaccattgtatatttattatttcagcacattggaattga 10426733  T
Q  428 tcaatttgaatgatacacatgcctccaaggtcttatctagaatttacagggcttgct 484  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  10426732 tcaatttgaatgatacacatgcct-caaggtcttatctagaatttacagagcttgct 10426677  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 10427718 - 10427623
Alignment:
Q  135 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatatttccctccatcatccaagtattaaattctccttag 230  Q
    ||||||| ||| ||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||    
T  10427718 tatcttttttattaaaggttgtttggtcaagcaatatcataccctaattttaacctaatatttccctccatcatccaagcattaaattcttcttag 10427623  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 9199750 - 9199845
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 230  Q
    ||||||||||||||||||| | || ||||||||||||||| || | | ||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatcatccaagcattaaattctccttag 9199845  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 9199512 - 9199573
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 197  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattt 9199573  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 515 - 566
Target Start/End: Complemental strand, 10426336 - 10426285
Alignment:
Q  515 ttaattcaacgcttcatcgtagtatctcggttctccacattattctctcctt 566  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  10426336 ttaattcaacgcttcatcgtaatatctccgttctccacattattctctcctt 10426285  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 9201332 - 9201384
Alignment:
Q  179 taattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 230  Q
    |||||||||| |||||||| ||| |||||||||||| ||||||||||||||||    
T  9201332 taattttaacctaatattttcccaccatcatccaagcattaaattctccttag 9201384  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 12094925 - 12094864
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 197  Q
    ||||||||||||||||||| |||| |||||| ||   | |||||||||||||| ||||||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattt 12094864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 24257703 - 24257764
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 197  Q
    ||||||||||||||||||| |||| |||||||||     |||||||||||||| ||||||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatattt 24257764  T

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Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 262 - 463
Target Start/End: Original strand, 4410741 - 4410938
Alignment:
Q  262 atgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatccttggtagcttctcctatgtgcggctgaagacttat 361  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||     | |||| ||    
T  4410741 atgcgctaatcttatcttaataaacataagttgcatcgtaaatgtaaggaaagttgaaaatatccttggtagcttctcctttgtgca----atgactgat 4410836  T
Q  362 ctgatgcatatttccaaatcctatcaacaccattgtatatttattaattcagcacattggaattgatcaatttgaatgatacacatgcctccaaggtctt 461  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  4410837 ctgatgcatattttcaaatcctatcagcaccattgtatattaattaattcagcacattggaattgatcaatgtgaatggtacacatgcctccaaggtctt 4410936  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 20077412 - 20077317
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 230  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatcatccaagcattaaattcaccttag 20077317  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 4407779 - 4407872
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 230  Q
    ||||||||||||||||| |||  | |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  ||||||||||||||||    
T  4407779 atctttcttactaaagcgtct--ggtcaagcaatatcataccctaattttaacctaatattttccctccatcacccaaacattaaattctccttag 4407872  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 30061499 - 30061581
Alignment:
Q  143 ttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattct 224  Q
    |||||||||||| | ||||||||| || |||||||||||||| | | ||||| |||||||||||  | |||||||| ||||||    
T  30061499 ttactaaagcttgtctgatcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagtatttaattct 30061581  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 4407898 - 4407926
Alignment:
Q  232 ttcattgctaccttcttaacatgtgactt 260  Q
    |||||||||||||||||||||||||||||    
T  4407898 ttcattgctaccttcttaacatgtgactt 4407926  T

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Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 26981034 - 26981130
Alignment:
Q  135 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 230  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||    
T  26981034 tatctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatcatccaagcattaaattctccttag 26981130  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 26083903 - 26083998
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 230  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||||||| |||||    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcatcaaagcattaaattcttcttag 26083998  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 5334273 - 5334363
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctc 225  Q
    |||||||||| ||||  || | ||||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||    
T  5334273 atctttcttattaaaaattatctgatcaaacaatatcataccctaattttaacctaagattttccctccatcatccaagcattaaattctc 5334363  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 42932716 - 42932773
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaat 193  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||||||| ||||    
T  42932716 atctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaat 42932773  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 7496756 - 7496788
Alignment:
Q  134 ttatctttcttactaaagcttctttgatcaagc 166  Q
    ||||||||||||||||||||| |||||||||||    
T  7496756 ttatctttcttactaaagcttgtttgatcaagc 7496788  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 31442516 - 31442609
Alignment:
Q  135 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctcct 227  Q
    |||||||||||||||||||| |||| |||||||||  ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  31442516 tatctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaattctcct 31442609  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 20916067 - 20915980
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaatt 222  Q
    ||||||||||||||||||| | |||||||||||||| ||||| |||||||||| ||||| ||||||||||||||||||| ||||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatcatccaagcattaaatt 20915980  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 7868018 - 7867948
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccat 205  Q
    ||||||||||||||||||| | || |||||| || |||||||||||||| | | ||||| |||||||||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccat 7867948  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 6697935 - 6698025
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctc 225  Q
    ||||||||||||||| ||| | || ||||||||| ||||||| |||||||||| ||||| |||||||||||||| |||| |||||||||||    
T  6697935 atctttcttactaaaacttgtctggtcaagcaatctcataccttaattttaacctaatattttccctccatcatgcaagcattaaattctc 6698025  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 9045160 - 9045218
Alignment:
Q  173 ataccctaattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 230  Q
    |||||||||||||||| |||||||| |||||||||||| ||  ||||||||||||||||    
T  9045160 ataccctaattttaacctaatattttccctccatcatcaaaacattaaattctccttag 9045218  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 11582599 - 11582669
Alignment:
Q  161 tcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 230  Q
    |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||  |||||||||| |||||    
T  11582599 tcaagcaatatcataccctaattttaacctaatattttccctccgtcatccaaacattaaattcttcttag 11582669  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 2241569 - 2241513
Alignment:
Q  133 cttatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaact 189  Q
    ||||| |||||||||||||||| |||  ||||||||| ||||||| |||||||||||    
T  2241569 cttatttttcttactaaagcttgtttcgtcaagcaatttcataccttaattttaact 2241513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 39484881 - 39484801
Alignment:
Q  134 ttatctttcttactaaagcttctttgatcaagcaatatcat-accctaattttaacttaata-tttccctccatcatccaa 212  Q
    ||||||||||||||||||||| |||| |||||| ||||  | |||||| ||||||| ||||| ||||||||||||| ||||    
T  39484881 ttatctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatcacccaa 39484801  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 15291460 - 15291530
Alignment:
Q  135 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatatttccctccat 205  Q
    |||||||||||||||||||| |||| |||||| ||    ||||||||| ||||| |||| |||||||||||    
T  15291460 tatctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaatttttccctccat 15291530  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 38996590 - 38996518
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatca 207  Q
    ||||||||||||||||||| | ||||||||| ||||  ||||||||||||||| ||||| |||||||||||||    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccatca 38996518  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 22625458 - 22625385
Alignment:
Q  135 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatca 207  Q
    |||||||||||||||| ||| | || |||||||||   |||||||||||||||| ||||| |||||||||||||    
T  22625458 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 22625385  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 28125536 - 28125606
Alignment:
Q  136 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccat 205  Q
    ||||||||||||||||||| | || |||||| || |||||||||||||| | | ||||| |||||||||||    
T  28125536 atctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccat 28125606  T

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