View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0365-Insertion-8 (Length: 348)
Name: NF0365-Insertion-8
Description: NF0365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365-Insertion-8 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 34327548 - 34327207
Alignment:
| Q |
7 |
ataaactggaaggtgctaaaattgtatattccaaggataatgttgcaattcatccaastcagtttgctgttagtggaaggttgaagttaattaatcaagg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
34327548 |
ataaactggaaggtgctaaaattgtatattccaaggataatgttgcaattcatccaacttagtttgctgttagtggaagattgaagttaattaagcaagg |
34327449 |
T |
|
| Q |
107 |
gtcttccttatttatggtcasaattgattaattgtttcgttaannnnnnnnnnnnnnnnatgtaaatgtattaagagaatgagatcattataaagtttga |
206 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34327448 |
gtcttccttatttatggtcacaaccgattaattgtttcgtttaattttttgttttttttatgtaaatgtattaagagaatgagataattataaagtttga |
34327349 |
T |
|
| Q |
207 |
tgagttgctggaattttttcgggctctttatgaagattatgaggatgatgagggctatgttggttaatttgtttatgttggttgtgttttatggaattct |
306 |
Q |
| |
|
||| |||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34327348 |
tgaattgctggaattttttcggactttttatgaaggttatgaggatgatgagggctatgttggttaatttgtttatgttggttgtgttttatggaattct |
34327249 |
T |
|
| Q |
307 |
ttgatcgatttatattctgttaaataagaactgggttgttgt |
348 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
34327248 |
ttgattgatttatattctgttaaacgagaactgagttgttgt |
34327207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 40724078 - 40723735
Alignment:
| Q |
7 |
ataaactggaaggtgctaaaattgtatattccaaggataatgttgcaattcatccaastcagtttgctgttagtggaaggttgaagttaattaatcaagg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| | ||| |
|
|
| T |
40724078 |
ataaactggaaggtgctaaaattgtatattccaaggataatgttgcaattcatccaactcagtttgctgttagtggaagattgaagttacttaagctagg |
40723979 |
T |
|
| Q |
107 |
gtcttccttatttatggtcasaattgattaattgtttcgttaannnnnnnnnnnnnnnn--atgtaaatgtattaagagaatgagatcattataaagttt |
204 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40723978 |
gtcttccttatttatggtcacaatcgattaattgtttcgttaatttttggtttttttttttatgtaaatgtattaagagaatgagataattataaagttt |
40723879 |
T |
|
| Q |
205 |
gatgagttgctggaattttttcgggctctttatgaagattatgaggatgatgagggctatgttggttaatttgtttatgttggttgtgttttatggaatt |
304 |
Q |
| |
|
||||| |||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40723878 |
gatgaattgctgaaattttttcgagctttttatgaagattatgaggatgatgagggttatgttggttaatttgtttatgttggttgtgttttatggaatt |
40723779 |
T |
|
| Q |
305 |
ctttgatcgatttatattctgttaaataagaactgggttgttgt |
348 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
40723778 |
ctttgattgatttatattctgttaaatgagagttgggttgttgt |
40723735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 47487321 - 47487182
Alignment:
| Q |
10 |
aactggaaggtgctaaaattgtatattccaaggataatgttgcaattcatccaastcagtttgctgttagtggaaggttgaagttaattaatcaagggtc |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||| |||||| | |
|
|
| T |
47487321 |
aactggaaggtgctgaaattgtatattccaaggataatgttgctattcatccaactcagtttgctattagtggaagattgaagttaattaagcaagggac |
47487222 |
T |
|
| Q |
110 |
ttccttatttatggtcasaattgattaattgtttcgttaa |
149 |
Q |
| |
|
|||||| |||||||| | ||| |||| |||||| ||||| |
|
|
| T |
47487221 |
ttccttgtttatggtgataatcgattggttgttttgttaa |
47487182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 348
Target Start/End: Original strand, 48096298 - 48096645
Alignment:
| Q |
7 |
ataaactggaaggtgctaaaattgtatattccaaggataatgttgcaattcatccaastcagtttgctgttagtggaaggttgaagttaattaatcaagg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
48096298 |
ataaactggaaggtgctaaaattgtatattccaaggataatgttgcaattcatccaactcagtttgctgttagtggaagattgaagttaattaagcaagg |
48096397 |
T |
|
| Q |
107 |
gtcttccttatttatggtcasaattgattaattgtttcgttaannnnnnnnnnnnnnnn---atgtaaatg---tattaagagaatgagatcattataaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
48096398 |
gtcttccttatttatggtcaaaatcgattaattgtttcgttaatttttggttttttttttttatgtaaatgatgtattaagagaatgagataattataaa |
48096497 |
T |
|
| Q |
201 |
gtttgatgagttgctggaattttttcgggctctttatgaagattatgaggatgatgagggctatgttggttaatttgtttatgttggttgtgttttatgg |
300 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48096498 |
gtttgatgaattgctgaaattttttcgggctttttatgaagattatgaggatgatgagggttatgttggttaatttgtttatgttggttgtgttttatgg |
48096597 |
T |
|
| Q |
301 |
aattctttgatcgatttatattctgttaaataagaactgggttgttgt |
348 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
48096598 |
aattctttgattgatttatattctgttaaatgagagttgggttgttgt |
48096645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 479 times since January 2019
Visitors: 3060