View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0365-Insertion-9 (Length: 388)
Name: NF0365-Insertion-9
Description: NF0365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 39676121 - 39675752
Alignment:
| Q |
8 |
atccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttggacaaggatttcctccggtagatttggcatgactttggtggtttt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676121 |
atccagacaccactgcaccaacaacctcctcatcttccatggacaaaactttttggacaaggatttcctccggtagatttggcatgactttggtggtttt |
39676022 |
T |
|
| Q |
108 |
cgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39676021 |
cgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaa |
39675922 |
T |
|
| Q |
208 |
actagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaaga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39675921 |
actagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaaga |
39675822 |
T |
|
| Q |
308 |
agagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcctttg |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
39675821 |
agagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcttttg |
39675752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 130 - 338
Target Start/End: Complemental strand, 10866426 - 10866218
Alignment:
| Q |
130 |
tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || | |||| ||||||||||| ||||| |||||||| |||| |
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|
| T |
10866426 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10866327 |
T |
|
| Q |
230 |
ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt |
329 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| | || |
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|
| T |
10866326 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10866227 |
T |
|
| Q |
330 |
tgttaagta |
338 |
Q |
| |
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||||||||| |
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|
| T |
10866226 |
tgttaagta |
10866218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 130 - 338
Target Start/End: Original strand, 10873879 - 10874087
Alignment:
| Q |
130 |
tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || | |||| ||||||||||| ||||| |||||||| |||| |
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|
| T |
10873879 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10873978 |
T |
|
| Q |
230 |
ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt |
329 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| | || |
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|
| T |
10873979 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10874078 |
T |
|
| Q |
330 |
tgttaagta |
338 |
Q |
| |
|
||||||||| |
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|
| T |
10874079 |
tgttaagta |
10874087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 130 - 338
Target Start/End: Original strand, 10878950 - 10879158
Alignment:
| Q |
130 |
tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || | |||| ||||||||||| ||||| |||||||| |||| |
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|
| T |
10878950 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10879049 |
T |
|
| Q |
230 |
ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt |
329 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| | || |
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|
| T |
10879050 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10879149 |
T |
|
| Q |
330 |
tgttaagta |
338 |
Q |
| |
|
||||||||| |
|
|
| T |
10879150 |
tgttaagta |
10879158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 130 - 338
Target Start/End: Original strand, 10884021 - 10884229
Alignment:
| Q |
130 |
tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || | |||| ||||||||||| ||||| |||||||| |||| |
|
|
| T |
10884021 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10884120 |
T |
|
| Q |
230 |
ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt |
329 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| | || |
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|
| T |
10884121 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10884220 |
T |
|
| Q |
330 |
tgttaagta |
338 |
Q |
| |
|
||||||||| |
|
|
| T |
10884221 |
tgttaagta |
10884229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 124 - 349
Target Start/End: Original strand, 10887942 - 10888167
Alignment:
| Q |
124 |
acttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatct |
223 |
Q |
| |
|
||||| ||||| || ||||||||||||| |||||||||| |||||||||||| ||||||||| | | |||| ||||||||||||| ||||| ||||| |
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|
| T |
10887942 |
acttcgtcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatct |
10888041 |
T |
|
| Q |
224 |
cggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaa |
323 |
Q |
| |
|
| |||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||| |
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|
| T |
10888042 |
cagagactgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaac |
10888141 |
T |
|
| Q |
324 |
agtgtttgttaagtaaagtgaagaag |
349 |
Q |
| |
|
|| ||||||||| || |||||||||| |
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|
| T |
10888142 |
agcgtttgttaaatacagtgaagaag |
10888167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 147 - 347
Target Start/End: Complemental strand, 10045975 - 10045775
Alignment:
| Q |
147 |
atgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggaga |
246 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||| ||||||| |||| | |||| ||||||||||| | | | |||||| ||||||||||| ||||| ||| |
|
|
| T |
10045975 |
atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga |
10045876 |
T |
|
| Q |
247 |
ggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaag |
346 |
Q |
| |
|
||||| |||||||||||||| |||||||||| || ||||||||| || |||||||||||||| ||||||||||||| | |||||||||||| ||||||| |
|
|
| T |
10045875 |
ggtgtggaggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaag |
10045776 |
T |
|
| Q |
347 |
a |
347 |
Q |
| |
|
| |
|
|
| T |
10045775 |
a |
10045775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 10866557 - 10866502
Alignment:
| Q |
8 |
atccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg |
63 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
10866557 |
atcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg |
10866502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 10873748 - 10873803
Alignment:
| Q |
8 |
atccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg |
63 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
10873748 |
atcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg |
10873803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 10878819 - 10878874
Alignment:
| Q |
8 |
atccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg |
63 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
10878819 |
atcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg |
10878874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 10883890 - 10883945
Alignment:
| Q |
8 |
atccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg |
63 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
10883890 |
atcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg |
10883945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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