View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0365_1D_high_3 (Length: 359)
Name: NF0365_1D_high_3
Description: NF0365_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365_1D_high_3 |
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| [»] scaffold0202 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 197 - 343
Target Start/End: Complemental strand, 31094550 - 31094405
Alignment:
| Q |
197 |
cgagagaaagaaagttccacctactttatagcagtctt-agagtctcacatcgataaaaacttaaacatcacacacctagtttacttataaaatagtatt |
295 |
Q |
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| T |
31094550 |
cgagagaaagaaagttccacccactttatagcactcttgagagtcccacatcgataaaaactta--catcacacacctagtttacttataaaatagtatt |
31094453 |
T |
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| Q |
296 |
cgtctatgttacaattcattgtagctacttggacccaattactttgtg |
343 |
Q |
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| T |
31094452 |
cgtctatgttacaattcattgtagctacttggacccaattactttgtg |
31094405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 31094734 - 31094639
Alignment:
| Q |
7 |
ctagaaactttggatctggtttgatataaaatgccatgacttaaactaatgggataatgaaaagtcttatagtttctatactgaataaatgaacct |
102 |
Q |
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| T |
31094734 |
ctagaaactttggatctggtttgatataaaatgccatgacttaaatcaatgggataatgaaaaggcttatagtttctatactgaataaatgaacct |
31094639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 31050790 - 31050838
Alignment:
| Q |
242 |
cacatcgataaaaacttaaacatcacacacctagtttacttataaaata |
290 |
Q |
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| T |
31050790 |
cacatcgataaaaacttaaacatcacacaccaagtttacctataaaata |
31050838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 31043046 - 31043126
Alignment:
| Q |
11 |
aaactttggatctggtttgatataaaatgccatgacttaaactaatgggataatgaaaagtcttatagtttctatactgaat |
92 |
Q |
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| T |
31043046 |
aaactttgggtctattttgatatgaaaagccatgacttaagctaataggataacgaaaag-gttatagtttctctactgaat |
31043126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 31050582 - 31050615
Alignment:
| Q |
7 |
ctagaaactttggatctggtttgatataaaatgc |
40 |
Q |
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| T |
31050582 |
ctagaaactttggatctggtttgatataaaatgc |
31050615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 3446 - 3355
Alignment:
| Q |
11 |
aaactttggatctggtttgatataaaatgccatgacttaaactaatgggataatgaaaagtcttatagtttctatactgaataaatgaacct |
102 |
Q |
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| T |
3446 |
aaactttggatctggtttgatataaaatgccatgagttaaactaatgggataatgaaaaggcttatagtttctatagtgaatgaatgaacct |
3355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 3241 - 3125
Alignment:
| Q |
198 |
gagagaaagaaagttccac--ctactttatagcagtcttagagtctcacatcgataaaaacttaaacatcacacacctagtttacttataaaatagtatt |
295 |
Q |
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||||||||||||||||||| | || |||||||| |||| ||||| ||||||||||||||| ||||||| ||||||| ||||||| |||||||| |||| |
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| T |
3241 |
gagagaaagaaagttccacacccaccttatagcactctt-gagtcccacatcgataaaaacataaacattacacaccaagtttacctataaaatgatatt |
3143 |
T |
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| Q |
296 |
cgtctatgttacaattca |
313 |
Q |
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| T |
3142 |
cgtctatgttacatttca |
3125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 350
Target Start/End: Complemental strand, 29894 - 29739
Alignment:
| Q |
197 |
cgagagaaagaaagttccac--ctactttatagcagtcttagagtctcacatcgataaaaacttaaa-catcacacacctagtttacttataaaatagta |
293 |
Q |
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|||||||||||||||||||| | ||||||||||| ||||| |||||||||||||||||||| |||| ||| ||||| | |||||||||||||||||||| |
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| T |
29894 |
cgagagaaagaaagttccacacccactttatagcactctta-agtctcacatcgataaaaacataaaacattacacatcaagtttacttataaaatagta |
29796 |
T |
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| Q |
294 |
ttcgtctatgttacaattcattgtagctacttggacccaattactttgtgatgtcca |
350 |
Q |
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||| |||||| |||||| | || || |||||||||||||||||||| |||||| |
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| T |
29795 |
ttcatctatgcaacaatttagattaactggttggacccaattactttgtgttgtcca |
29739 |
T |
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