View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0365_1D_low_1 (Length: 565)
Name: NF0365_1D_low_1
Description: NF0365_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365_1D_low_1 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 24 - 565
Target Start/End: Complemental strand, 1164617 - 1164076
Alignment:
| Q |
24 |
cttgtgactgagtgtgaggtgaagttgcaacaggcctgttgagattccgatcatcgttccttaacatggggttgcttcttggagattgattgtttcccat |
123 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1164617 |
cttgtgactgagtgtgaggtgaaattgcaacaggcctgttgagattccgatcatcgttccttaacatggggttgcttcttggagattgattgtttcccat |
1164518 |
T |
|
| Q |
124 |
accacgacccatgctaccagcttgtgcttgagcctgcctctcttccacagcatctctgtgtacctcctcaattttctttggaccatcaactttcctcctt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1164517 |
accacgacccatgctaccagcttgtgcttgagcctgcctctcttccacagcatctctgtgtacctcctcaattttctttggaccatcaactttcctcctt |
1164418 |
T |
|
| Q |
224 |
acttgccatctattccttctcaaatcaattacgcccttcaacataaacctcaccatagaagatagattcatgttgtttgataatattttcaacttttgga |
323 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1164417 |
acttgccatctattccttctcaaatcaattacgtccttcaacataaacctcaccatagaagatagattcatgttgtttgataatattttcaacttttcga |
1164318 |
T |
|
| Q |
324 |
aatatacatccatatgttccttagttttgggatggtcaatcatctccccaataatactcatcagcttgcacagagcctcaacatcttcgtcatcaggata |
423 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1164317 |
aatatacacccatatgttccttagttttgggatggtcaatcatctccccaataatactcatcagcttgcacagagcctcaacatcttcgtcatcaggata |
1164218 |
T |
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| Q |
424 |
ctcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcctctctgacaacattttcttcttatatagttct |
523 |
Q |
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||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1164217 |
ctcaacatcttcctcatcaggatactgaccctgacctattaacttctttatacactcatgcattatcctctctgtcaacattttcttcttatatagttct |
1164118 |
T |
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| Q |
524 |
ccaatcaatctgatgtttcctaacatgcgcattctttccttg |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
1164117 |
ccaatcaatctgatgtttcctaacatgcgcattctttccttg |
1164076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 88 - 422
Target Start/End: Original strand, 1814258 - 1814592
Alignment:
| Q |
88 |
catggggttgcttcttggagattgattgtttcccataccacgacccatgctaccagcttgtgcttgagcctgcctctcttccacagcatctctgtgtacc |
187 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
1814258 |
catggggttccttcttgcagattgattgtttcccataccacgacccgtcctaccaacttgtgcttgagcctgcctttcttgcacggcatctctgtgtacc |
1814357 |
T |
|
| Q |
188 |
tcctcaattttctttggaccatcaactttcctccttacttgccatctattccttctcaaatcaattacgcccttcaacataaacctcaccatagaagata |
287 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||| |
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| T |
1814358 |
tcctcaatcttctttggaccatcaacttttctccttacttgccatctattccttctcaaatcaattacatccttcaacataaatcttaccctagaagata |
1814457 |
T |
|
| Q |
288 |
gattcatgttgtttgataatattttcaacttttggaaatatacatccatatgttccttagttttgggatggtcaatcatctccccaataatactcatcag |
387 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
1814458 |
aattcatgttgtttgataatattttcaacctttcaaaatatacatccatatgttctttagctttgggatggtcaatcatctccccaatagtactcatcag |
1814557 |
T |
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| Q |
388 |
cttgcacagagcctcaacatcttcgtcatcaggat |
422 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |
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| T |
1814558 |
cttgcacagagcctcaacatcttcctcatcaggat |
1814592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 207 - 422
Target Start/End: Complemental strand, 1166331 - 1166116
Alignment:
| Q |
207 |
catcaactttcctccttacttgccatctattccttctcaaatcaattacgcccttcaacataaacctcaccatagaagatagattcatgttgtttgataa |
306 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||| || ||||||||||||||| |
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| T |
1166331 |
catcaactttcctcattacttgccatctattccctctcaaatcaattacatctttcaacataaacctcaccctagaagataaatccatgttgtttgataa |
1166232 |
T |
|
| Q |
307 |
tattttcaacttttggaaatatacatccatatgttccttagttttgggatggtcaatcatctccccaataatactcatcagcttgcacagagcctcaaca |
406 |
Q |
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| T |
1166231 |
tattttcaaactttcgaaatatacatccatatgttccttagctttggggtggtcaatcatctccccgatagaactcatcagcttgcacagagcctcaaca |
1166132 |
T |
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| Q |
407 |
tcttcgtcatcaggat |
422 |
Q |
| |
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|||| |||||||||| |
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| T |
1166131 |
tctttctcatcaggat |
1166116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 424 - 565
Target Start/End: Original strand, 1814570 - 1814711
Alignment:
| Q |
424 |
ctcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcctctctgacaacattttcttcttatatagttct |
523 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||| |||||| |
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| T |
1814570 |
ctcaacatcttcctcatcaggatcctgacactgacctagtaacttctttatgcactcgtgcattatcctctctgtcaacattttcttcttataaagttct |
1814669 |
T |
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| Q |
524 |
ccaatcaatctgatgtttcctaacatgcgcattctttccttg |
565 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
1814670 |
ccaatcaatctgatgtttcctaacatgcgccttcttgccttg |
1814711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 424 - 565
Target Start/End: Complemental strand, 1166138 - 1165997
Alignment:
| Q |
424 |
ctcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcctctctgacaacattttcttcttatatagttct |
523 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
1166138 |
ctcaacatctttctcatcaggatcctgacacagacctggtaacttctttatacactcatgaattatcctctctgtcaacattttcttcttatatagttct |
1166039 |
T |
|
| Q |
524 |
ccaatcaatctgatgtttcctaacatgcgcattctttccttg |
565 |
Q |
| |
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||||| ||||||||||||||| |||||||| ||||| ||||| |
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| T |
1166038 |
ccaataaatctgatgtttcctgacatgcgccttcttgccttg |
1165997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 1813755 - 1813804
Alignment:
| Q |
38 |
tgaggtgaagttgcaacaggcctgttgagattccgatcatcgttccttaa |
87 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||| |||||||| |
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| T |
1813755 |
tgaggtgaagttgcaacaggcctatttagattccgatcatcattccttaa |
1813804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 172 - 422
Target Start/End: Complemental strand, 17254180 - 17253930
Alignment:
| Q |
172 |
agcatctctgtgtacctcctcaattttctttggaccatcaactttcctccttacttgccatctattccttctcaaatcaattacgcccttcaacataaac |
271 |
Q |
| |
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|||||||| ||| ||||| ||||| ||||||||||| ||||| || |||||| ||||||| |||| ||||||||||||| | |||||||| ||| |
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| T |
17254180 |
agcatctcggtgcacctcttcaatcttctttggaccttcaacctttctcctttgctgccatcgattctttctcaaatcaatggtatctttcaacatgaac |
17254081 |
T |
|
| Q |
272 |
ctcaccatagaagatagattcatgttgtttgataatattttcaacttttggaaatatacatccatatgttccttagttttgggatggtcaatcatctccc |
371 |
Q |
| |
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|||| | ||||||||| ||||||||||||||||||| ||| | | ||| ||||||||||||||||||||||| | |||||| |||||||||||||||| |
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| T |
17254080 |
ctcaacctagaagataagttcatgttgtttgataataatttaatcctttcaaaatatacatccatatgttccttggctttggggtggtcaatcatctccc |
17253981 |
T |
|
| Q |
372 |
caataatactcatcagcttgcacagagcctcaacatcttcgtcatcaggat |
422 |
Q |
| |
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||||| |||||||||| ||||||||||| |||| |||||| |||||||||| |
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| T |
17253980 |
caatagtactcatcagtttgcacagagcttcaatatcttcttcatcaggat |
17253930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 425 - 537
Target Start/End: Complemental strand, 17253951 - 17253839
Alignment:
| Q |
425 |
tcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcctctctgacaacattttcttcttatatagttctc |
524 |
Q |
| |
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|||| |||||| |||||||||| |||||||||||| || ||||| || || ||||| |||||||||||||||| || ||||||||||||||||||||||| |
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| T |
17253951 |
tcaatatcttcttcatcaggattctgacactgacccagtaactttttgatgcactcgtgcattatcctctctgtcagcattttcttcttatatagttctc |
17253852 |
T |
|
| Q |
525 |
caatcaatctgat |
537 |
Q |
| |
|
|||| |||||||| |
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|
| T |
17253851 |
caattaatctgat |
17253839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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