View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0365_1D_low_10 (Length: 247)

Name: NF0365_1D_low_10
Description: NF0365_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0365_1D_low_10
NF0365_1D_low_10
[»] scaffold0197 (2 HSPs)
scaffold0197 (10-215)||(19254-19459)
scaffold0197 (14-215)||(14403-14604)
[»] scaffold0028 (1 HSPs)
scaffold0028 (10-215)||(149045-149250)
[»] chr8 (8 HSPs)
chr8 (10-215)||(35745182-35745387)
chr8 (14-215)||(10684358-10684559)
chr8 (62-189)||(39784965-39785091)
chr8 (49-184)||(6311121-6311254)
chr8 (62-189)||(25328420-25328545)
chr8 (49-184)||(7290055-7290188)
chr8 (94-160)||(18853353-18853418)
chr8 (56-160)||(10689289-10689392)
[»] chr6 (13 HSPs)
chr6 (10-214)||(16838536-16838740)
chr6 (10-214)||(6005209-6005413)
chr6 (10-215)||(5343271-5343477)
chr6 (8-215)||(33330532-33330741)
chr6 (8-214)||(33336029-33336237)
chr6 (28-189)||(28155676-28155837)
chr6 (27-216)||(6438292-6438480)
chr6 (56-215)||(11856764-11856921)
chr6 (62-189)||(14737718-14737843)
chr6 (62-189)||(28184320-28184448)
chr6 (56-189)||(14742571-14742702)
chr6 (56-186)||(22010832-22010960)
chr6 (56-160)||(30125940-30126044)
[»] chr5 (18 HSPs)
chr5 (10-214)||(2785167-2785371)
chr5 (10-217)||(31401939-31402146)
chr5 (10-215)||(31397082-31397287)
chr5 (10-215)||(33791107-33791312)
chr5 (10-215)||(33767970-33768175)
chr5 (28-214)||(37561551-37561740)
chr5 (28-215)||(37556729-37556919)
chr5 (27-214)||(28807678-28807868)
chr5 (49-184)||(1457290-1457423)
chr5 (49-184)||(27444793-27444926)
chr5 (49-184)||(27449637-27449770)
chr5 (49-164)||(43592120-43592235)
chr5 (49-184)||(43598547-43598680)
chr5 (49-184)||(43604039-43604172)
chr5 (49-184)||(43609531-43609664)
chr5 (62-189)||(15044507-15044630)
chr5 (63-164)||(30631249-30631349)
chr5 (63-115)||(24135742-24135794)
[»] scaffold0259 (1 HSPs)
scaffold0259 (10-214)||(2340-2544)
[»] chr3 (15 HSPs)
chr3 (8-215)||(10207724-10207932)
chr3 (8-218)||(2677174-2677386)
chr3 (8-218)||(2673018-2673230)
chr3 (14-215)||(8516886-8517088)
chr3 (14-214)||(8512007-8512208)
chr3 (14-214)||(32475276-32475476)
chr3 (14-215)||(32480132-32480334)
chr3 (10-156)||(24967957-24968103)
chr3 (28-218)||(18656224-18656410)
chr3 (56-186)||(22173330-22173458)
chr3 (49-160)||(2671725-2671836)
chr3 (49-160)||(7167092-7167201)
chr3 (49-164)||(28503995-28504108)
chr3 (94-160)||(8739249-8739314)
chr3 (94-160)||(9091487-9091552)
[»] scaffold0009 (1 HSPs)
scaffold0009 (14-217)||(182058-182261)
[»] chr7 (13 HSPs)
chr7 (14-215)||(16879863-16880064)
chr7 (14-215)||(16884719-16884920)
chr7 (14-215)||(24261417-24261618)
chr7 (14-214)||(24266296-24266496)
chr7 (22-214)||(21812339-21812532)
chr7 (27-214)||(19992104-19992292)
chr7 (44-189)||(24024451-24024594)
chr7 (56-189)||(12396730-12396861)
chr7 (56-189)||(12406150-12406281)
chr7 (62-189)||(31109725-31109849)
chr7 (68-189)||(4866548-4866667)
chr7 (36-160)||(20357672-20357797)
chr7 (94-160)||(2057806-2057871)
[»] chr1 (7 HSPs)
chr1 (35-217)||(43988580-43988762)
chr1 (27-218)||(39445288-39445479)
chr1 (27-214)||(25445195-25445382)
chr1 (44-189)||(44023997-44024140)
chr1 (27-214)||(1055117-1055304)
chr1 (104-189)||(41386566-41386650)
chr1 (96-189)||(41398055-41398147)
[»] chr2 (7 HSPs)
chr2 (14-215)||(19349069-19349270)
chr2 (14-214)||(19344212-19344412)
chr2 (62-214)||(32246577-32246728)
chr2 (62-189)||(39812129-39812255)
chr2 (56-186)||(44312759-44312887)
chr2 (49-160)||(9296540-9296651)
chr2 (49-114)||(14291380-14291446)
[»] chr4 (9 HSPs)
chr4 (27-214)||(18855519-18855706)
chr4 (44-214)||(3813816-3813986)
chr4 (56-215)||(9224542-9224699)
chr4 (28-218)||(5732454-5732640)
chr4 (56-189)||(9229329-9229460)
chr4 (62-214)||(45347959-45348109)
chr4 (62-214)||(45357438-45357588)
chr4 (49-185)||(56146840-56146974)
chr4 (49-184)||(51520280-51520413)
[»] scaffold0464 (1 HSPs)
scaffold0464 (27-215)||(154-342)
[»] scaffold0355 (2 HSPs)
scaffold0355 (44-189)||(9764-9907)
scaffold0355 (44-189)||(13-148)
[»] scaffold0135 (1 HSPs)
scaffold0135 (56-189)||(35197-35328)
[»] scaffold0127 (1 HSPs)
scaffold0127 (104-189)||(34132-34216)
[»] scaffold0777 (1 HSPs)
scaffold0777 (166-215)||(6292-6341)
[»] scaffold0479 (1 HSPs)
scaffold0479 (126-215)||(13140-13228)


Alignment Details
Target: scaffold0197 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 19254 - 19459
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  19254 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 19353  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19354 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 19453  T
Q  210 caacaa 215  Q
    ||||||    
T  19454 caacaa 19459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 14403 - 14604
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  14403 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 14501  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  14502 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcacaa 14601  T
Q  213 caa 215  Q
    |||    
T  14602 caa 14604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 149045 - 149250
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  149045 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 149144  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  149145 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 149244  T
Q  210 caacaa 215  Q
    ||||||    
T  149245 caacaa 149250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 35745387 - 35745182
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  35745387 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 35745288  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35745287 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 35745188  T
Q  210 caacaa 215  Q
    ||||||    
T  35745187 caacaa 35745182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 10684358 - 10684559
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  10684358 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 10684456  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10684457 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 10684556  T
Q  213 caa 215  Q
    |||    
T  10684557 caa 10684559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 39784965 - 39785091
Alignment:
Q  62 gtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||||||||||| ||| |||| ||||||||||||||| || |||||||| |||||||  ||||| ||||||| |||||||||||||||||||||    
T  39784965 gtgtggttttgctatacactag-cttagggctgttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 39785063  T
Q  161 attggtttattctcattggtgtgaaggtt 189  Q
     |||||||||| |||||||||||||||||    
T  39785064 tttggtttatt-tcattggtgtgaaggtt 39785091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 6311254 - 6311121
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| |||||||||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||  |||||||  ||||| ||||| | |||||||||    
T  6311254 ttgttatctcttagtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcactt 6311155  T
Q  149 gctccacacatcattggtttattctcattggtgtga 184  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  6311154 gctccacacatcatt-gtttatt-tcattggtgtga 6311121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 25328420 - 25328545
Alignment:
Q  62 gtgtggttttgctatacattagacttaggct-gttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||||||||||| |||  ||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||| ||||||    
T  25328420 gtgtggttttgctatacactag--ttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacatc 25328517  T
Q  161 attggtttattctcattggtgtgaaggtt 189  Q
    |||| |||||| |||||| ||||||||||    
T  25328518 attgatttatt-tcattgttgtgaaggtt 25328545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 184
Target Start/End: Original strand, 7290055 - 7290188
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| |||||||||||||| |||||| |||||||  ||||| ||||| | ||||| |||    
T  7290055 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgtttggagaccatttgttctcattgattaccactatctctt 7290154  T
Q  149 gctccacacatcattggtttattctcattggtgtga 184  Q
    ||||||||||||| | ||||||| ||||||||||||    
T  7290155 gctccacacatcaat-gtttatt-tcattggtgtga 7290188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 18853353 - 18853418
Alignment:
Q  94 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||| ||||||||||||||||  ||||||| |||||||||||| | ||||| |||||||||||||||    
T  18853353 tttttttgttgtttgcttggaaaccatttg-actcatagattaccactatctcttgctccacacatc 18853418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 10689289 - 10689392
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctcca 154  Q
    ||||| ||||||||||||| |||| || |||  || |||||| ||||||||| |||||||  ||||| | |||||||||||| | ||||| |||||||||    
T  10689289 ctctttgtgtggttttgctctacactacactagggttgtttttgttgttgtt-gcttggaaaccattag-actcatagattaccactatctcttgctcca 10689386  T
Q  155 cacatc 160  Q
    ||||||    
T  10689387 cacatc 10689392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 16838740 - 16838536
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  16838740 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 16838641  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 209  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16838640 ttgaaggccatttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 16838541  T
Q  210 caaca 214  Q
    |||||    
T  16838540 caaca 16838536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 6005413 - 6005209
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  6005413 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 6005314  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6005313 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattta 6005214  T
Q  210 caaca 214  Q
    |||||    
T  6005213 caaca 6005209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 5343477 - 5343271
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgtttg 108  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |    
T  5343477 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggtttttgctatactttaggcttaggctgttttgttgttgttag 5343378  T
Q  109 cttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  5343377 cttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgacttattctcattggtgtgaaggttcattagttgagccggattc 5343278  T
Q  209 acaacaa 215  Q
    |||||||    
T  5343277 acaacaa 5343271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 33330532 - 33330741
Alignment:
Q  8 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgt 105  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  33330532 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggtttttgctatacattaggcttaggctgttttgttgttgt 33330631  T
Q  106 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 205  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33330632 tagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctaattggtgtgaaggttcattagttgagccgga 33330731  T
Q  206 ttcacaacaa 215  Q
    ||||||||||    
T  33330732 ttcacaacaa 33330741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 33336029 - 33336237
Alignment:
Q  8 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttg-ctatacattagacttaggctgttttgttgttgt 105  Q
    ||||||||||||| |||  ||| || ||||||||||| |||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  33336029 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggtttttactatacattaggcttaggctgttttgttgttgt 33336128  T
Q  106 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 205  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33336129 tagtttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 33336228  T
Q  206 ttcacaaca 214  Q
    |||||||||    
T  33336229 ttcacaaca 33336237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 28155676 - 28155837
Alignment:
Q  28 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 125  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| ||||| || ||||||||     
T  28155676 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttgaagaccatttgct 28155775  T
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 189  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  28155776 ctcattgattatcactatcacttgctccacacatcatt-gtttatt-gcattggtgtgaaggtt 28155837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 6438480 - 6438292
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| |||||| |    
T  6438480 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccattgg 6438383  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaa 216  Q
      ||||| ||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||| || || || ||||| ||||||||||    
T  6438382 ttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggttcgtttgtagaaccggaatcacaacaaa 6438292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 215
Target Start/End: Complemental strand, 11856921 - 11856764
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  11856921 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 11856822  T
Q  156 acatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 215  Q
    |||||||| ||||||| |||||||||||||||||  ||  |||| |||||||||||||||    
T  11856821 acatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaacaa 11856764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 14737718 - 14737843
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 161  Q
    |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  14737718 gtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 14737817  T
Q  162 ttggtttattctcattggtgtgaaggtt 189  Q
    || ||||||| |||||||||||||||||    
T  14737818 tt-gtttatt-tcattggtgtgaaggtt 14737843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 28184448 - 28184320
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggcca--tttgcactcatagattatctctatcacttgctccacacat 159  Q
    |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||  ||||  ||||| ||||||| ||||||||||||||||||||    
T  28184448 gtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacat 28184349  T
Q  160 cattggtttattctcattggtgtgaaggtt 189  Q
    |||||||||||| |||||||||||||||||    
T  28184348 cattggtttatt-tcattggtgtgaaggtt 28184320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 14742571 - 14742702
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||| ||||||||| |||||||  ||||| ||||||| ||||||||||||||||    
T  14742571 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtatgcttggagaccatttgttctcattgattatcactatcacttgctccac 14742670  T
Q  156 acatcattggtttattctcattggtgtgaaggtt 189  Q
    |||||||| ||||||| |||||||||||||||||    
T  14742671 acatcatt-gtttatt-tcattggtgtgaaggtt 14742702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 22010832 - 22010960
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| | | ||  ||| | ||||||||||||||||||||| |||||||  ||||| ||||| | ||||||||||||||||    
T  22010832 ctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccac 22010931  T
Q  156 acatcattggtttattctcattggtgtgaag 186  Q
    |||||||| ||||||| ||||||||||||||    
T  22010932 acatcatt-gtttatt-tcattggtgtgaag 22010960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 30125940 - 30126044
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctcca 154  Q
    ||||| ||||||||||||| |||| ||| ||  ||||||||| ||||| ||| |||||||| |||||||  ||||||||||||| ||| | |||||||||    
T  30125940 ctctttgtgtggttttgctctacactagtctagggctgtttttgttgtagttagcttggagaccatttgg-ctcatagattatcactacctcttgctcca 30126038  T
Q  155 cacatc 160  Q
    ||||||    
T  30126039 cacatc 30126044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 2785371 - 2785167
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  2785371 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 2785272  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785271 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 2785172  T
Q  210 caaca 214  Q
    |||||    
T  2785171 caaca 2785167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 31401939 - 31402146
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||    
T  31401939 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctttacattaggcttaggctgttttgttgttgttagc 31402038  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  31402039 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattca 31402138  T
Q  210 caacaaaa 217  Q
    ||||||||    
T  31402139 caacaaaa 31402146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 31397082 - 31397287
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  31397082 ggtgtttgtttgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctttacattaggcttaggatgttttgttgttgttagc 31397181  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  31397182 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattca 31397281  T
Q  210 caacaa 215  Q
    ||||||    
T  31397282 caacaa 31397287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 33791312 - 33791107
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||| ||    
T  33791312 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagc 33791213  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33791212 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattca 33791113  T
Q  210 caacaa 215  Q
    ||||||    
T  33791112 caacaa 33791107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 33768175 - 33767970
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||| |||  |||||||||||||| ||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||| ||    
T  33768175 ggtgtttgttcttttccttttatcgtttatcctgtatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagc 33768076  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 209  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33768075 ttggaggtcatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattca 33767976  T
Q  210 caacaa 215  Q
    ||||||    
T  33767975 caacaa 33767970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 37561551 - 37561740
Alignment:
Q  28 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 125  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| |||||||||||||||||     
T  37561551 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgct 37561650  T
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaaca 214  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| || ||||||||| ||||||||||||||    
T  37561651 ctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaaggtttgattagttgaaccggattcacaaca 37561740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 37556729 - 37556919
Alignment:
Q  28 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 125  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| |||||||||||||||||     
T  37556729 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgct 37556828  T
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaag-gttcattagttgagccggattcacaacaa 215  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||  || ||||||||| |||||||||||||||    
T  37556829 ctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaagatttgattagttgaaccggattcacaacaa 37556919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 28807678 - 28807868
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggtttt--gctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatt 121  Q
    ||||| ||||||||||||  |||||||||||||||| | ||||||||  |||||||| ||| |||||| |||||| ||||||||||||||||| ||||||    
T  28807678 ttttaccgtttatcttgtttatgcttgttagctctttgagtggttttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatt 28807775  T
Q  122 tgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaaca 214  Q
    ||  ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  28807776 tgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaaca 28807868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 184
Target Start/End: Original strand, 1457290 - 1457423
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  1457290 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 1457389  T
Q  149 gctccacacatcattggtttattctcattggtgtga 184  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  1457390 gctccacacatcatt-gtttatt-tcattggtgtga 1457423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 27444926 - 27444793
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| | ||||||||||||||||||| ||||||| |||||| ||||| | ||||| |||    
T  27444926 ttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctctt 27444827  T
Q  149 gctccacacatcattggtttattctcattggtgtga 184  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  27444826 gctccacacatcatt-gtttatt-tcattggtgtga 27444793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 27449770 - 27449637
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| | ||||||||||||||||||| ||||||| |||||| ||||| | ||||| |||    
T  27449770 ttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctctt 27449671  T
Q  149 gctccacacatcattggtttattctcattggtgtga 184  Q
    |||||||| |||||| ||||||| ||||||||||||    
T  27449670 gctccacatatcatt-gtttatt-tcattggtgtga 27449637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 43592235 - 43592120
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  43592235 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 43592136  T
Q  149 gctccacacatcattg 164  Q
    ||||||||||||||||    
T  43592135 gctccacacatcattg 43592120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 43598680 - 43598547
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43598680 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43598581  T
Q  149 gctccacacatcattggtttattctcattggtgtga 184  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  43598580 gctccacacatcatt-gtttatt-tcattggtgtga 43598547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 43604172 - 43604039
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43604172 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43604073  T
Q  149 gctccacacatcattggtttattctcattggtgtga 184  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  43604072 gctccacacatcatt-gtttatt-tcattggtgtga 43604039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 43609664 - 43609531
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43609664 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43609565  T
Q  149 gctccacacatcattggtttattctcattggtgtga 184  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  43609564 gctccacacatcatt-gtttatt-tcattggtgtga 43609531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 15044630 - 15044507
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 161  Q
    |||||||||||||||||| ||| ||  |||||||||||||||||| | |||||| |||||||  ||||| ||||| | ||||||||||||| |||| |||    
T  15044630 gtgtggttttgctatacactagtctagggctgttttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtca 15044531  T
Q  162 ttggtttattctcattggtgtgaaggtt 189  Q
    |||   |||| |||||||||||||||||    
T  15044530 ttg---tatt-tcattggtgtgaaggtt 15044507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 30631349 - 30631249
Alignment:
Q  63 tgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcat 162  Q
    |||| |||||||||||| ||| ||  |||||||||||||||||| ||||| |  |||||||  ||||||||||| | ||||| |||||||||||||||||    
T  30631349 tgtgattttgctatacactagtctagggctgttttgttgttgtt-gcttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcat 30631251  T
Q  163 tg 164  Q
    ||    
T  30631250 tg 30631249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 24135794 - 24135742
Alignment:
Q  63 tgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggag 115  Q
    |||||| ||||| |||| ||| ||  |||||||||||||||||||||||||||    
T  24135794 tgtggtgttgctctacactagtctagggctgttttgttgttgtttgcttggag 24135742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 2340 - 2544
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  2340 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 2439  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 209  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2440 ttggaggccatttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 2539  T
Q  210 caaca 214  Q
    |||||    
T  2540 caaca 2544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 10207932 - 10207724
Alignment:
Q  8 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtt 106  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10207932 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtt 10207833  T
Q  107 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggat 206  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10207832 agcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggat 10207733  T
Q  207 tcacaacaa 215  Q
    |||||||||    
T  10207732 tcacaacaa 10207724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 2677174 - 2677386
Alignment:
Q  8 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtt 106  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2677174 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtt 2677273  T
Q  107 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccgga 205  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2677274 agcttggaggccatttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccgga 2677373  T
Q  206 ttcacaacaaaaa 218  Q
    |||||||||||||    
T  2677374 ttcacaacaaaaa 2677386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 2673018 - 2673230
Alignment:
Q  8 ttggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtt 106  Q
    ||||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2673018 ttggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtt 2673117  T
Q  107 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccgga 205  Q
     ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2673118 agcttggaggccatttactctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccgga 2673217  T
Q  206 ttcacaacaaaaa 218  Q
    |||||||||||||    
T  2673218 ttcacaacaaaaa 2673230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 8517088 - 8516886
Alignment:
Q  14 tttgttcgttttgttttatcgttt-atcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttg 112  Q
    ||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||    
T  8517088 tttgttcgttttcgtttatcgttttatcttgtatgcttgttaactcttagtgtggttgtgctacacattaggcttaggctgttttgttgttgttagcttg 8516989  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 212  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8516988 gaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 8516889  T
Q  213 caa 215  Q
    |||    
T  8516888 caa 8516886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 8512208 - 8512007
Alignment:
Q  14 tttgttcgttttgttttatcgttt-atcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttg 112  Q
    ||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||    
T  8512208 tttgttcgttttcgtttatcgttttatcttgtatgcttgttaactcttagtgtggttgtgctacacattaggcttaggctgttttgttgttgttagcttg 8512109  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 212  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8512108 gaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 8512009  T
Q  213 ca 214  Q
    ||    
T  8512008 ca 8512007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 32475476 - 32475276
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || | |||    
T  32475476 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagtttg 32475378  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32475377 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 32475278  T
Q  213 ca 214  Q
    ||    
T  32475277 ca 32475276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 32480334 - 32480132
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttg-tttgcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || | |||    
T  32480334 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagtttg 32480236  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattgg-tttattctcattggtgtgaaggttcattagttgagccggattcaca 211  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32480235 gaggccatttgcactcatagattacctctatctcttgctccacacatctttggatttattctcattggtgtgaaggttcattagttgagccggattcaca 32480136  T
Q  212 acaa 215  Q
    ||||    
T  32480135 acaa 32480132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 24968103 - 24967957
Alignment:
Q  10 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  24968103 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 24968004  T
Q  110 ttggaggccatttgcactcatagattatctctatcacttgctccaca 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24968003 ttggaggccatttgcactcatagattatctctatcacttgctccaca 24967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 18656410 - 18656224
Alignment:
Q  28 tttatcgtttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgca 125  Q
    |||| |||||||||||| ||||| |||||||||| |||||||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||      
T  18656410 tttaccgtttatcttgtttgctttgttagctctttgtgtggtttttctatacactag-cttagggctgttttgttgttgttagcttggagaccatttgtt 18656312  T
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaaa 218  Q
    ||||| ||||| | | |||||||||||||||||||||||   |||| |||||||||||||||||  ||  | || ||||||||||||||||||    
T  18656311 ctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtttctt--tggaaccggattcacaacaaaaa 18656224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 22173330 - 22173458
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  22173330 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 22173429  T
Q  156 acatcattggtttattctcattggtgtgaag 186  Q
    |||||||| ||||||| ||||||||||||||    
T  22173430 acatcatt-gtttatt-tcattggtgtgaag 22173458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 2671725 - 2671836
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcact 147  Q
    |||||| ||||| |||||||||| || |||| ||||||  ||||||||| |||||||||||||||||| |||||||  ||||||||||| | ||||| ||    
T  2671725 ttgttatctctttgtgtggtttttctctacactagactagggctgtttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctct 2671823  T
Q  148 tgctccacacatc 160  Q
    |||||||||||||    
T  2671824 tgctccacacatc 2671836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 7167201 - 7167092
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| ||||||||||||| |||| ||| ||  |||||||||||||||| |||||||||  ||||||   ||||||||||| | ||||| |||    
T  7167201 ttgttatctctttgtgtggttttgctctacactagtctagggctgttttgttgttg-ttgcttggaaaccattt-tgctcatagattaccactatctctt 7167104  T
Q  149 gctccacacatc 160  Q
    ||||||||||||    
T  7167103 gctccacacatc 7167092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 28503995 - 28504108
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| |   |||||||||||||||| |||||||||  ||||||   ||||||||||||| ||| |  ||    
T  28503995 ttgttatctctttgtgtggttttgctatacactagtcaagggctgttttgttgttg-ttgcttggaaaccattt-ttctcatagattatcactacctttt 28504092  T
Q  149 gctccacacatcattg 164  Q
    ||||||||||||||||    
T  28504093 gctccacacatcattg 28504108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 8739249 - 8739314
Alignment:
Q  94 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||| ||||||||||  ||||||| |||||||||||| | ||||  |||||||||||||||    
T  8739249 ttttgttgttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatc 8739314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 9091487 - 9091552
Alignment:
Q  94 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||| ||||||||||  ||||||| |||||||||||| | ||||  |||||||||||||||    
T  9091487 ttttgttgttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatc 9091552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 182058 - 182261
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  182058 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 182156  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  182157 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 182256  T
Q  213 caaaa 217  Q
    |||||    
T  182257 caaaa 182261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 16880064 - 16879863
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  16880064 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 16879966  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16879965 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 16879866  T
Q  213 caa 215  Q
    |||    
T  16879865 caa 16879863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 16884920 - 16884719
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  16884920 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 16884822  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16884821 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 16884722  T
Q  213 caa 215  Q
    |||    
T  16884721 caa 16884719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 24261417 - 24261618
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  24261417 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 24261515  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  24261516 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcacaa 24261615  T
Q  213 caa 215  Q
    |||    
T  24261616 caa 24261618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 24266296 - 24266496
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 112  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  24266296 tttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 24266394  T
Q  113 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 212  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24266395 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 24266494  T
Q  213 ca 214  Q
    ||    
T  24266495 ca 24266496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 21812339 - 21812532
Alignment:
Q  22 ttttgttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggcc 118  Q
    |||| ||||| ||||||||||||  |||||||||| ||||| |||||||||||||||||| ||| |||||| |||||| ||||||||| ||||||| |||    
T  21812339 ttttcttttaccgtttatcttgtttatgcttgttaactctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgttagcttggaagcc 21812436  T
Q  119 atttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaaca 214  Q
    |||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||  |||||||||||||    
T  21812437 atttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaatcggattcacaaca 21812532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 19992292 - 19992104
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||  ||||||| ||||||||    
T  19992292 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtaagcttggaagccatttg 19992195  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt-cattagttgagccggattcacaaca 214  Q
      ||||| ||||||| ||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  19992194 ttctcattgattatcactatcacctgctccacacatctttggtttatt-tcattggtgtgaaggttccattagttgaaccggattcacaaca 19992104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 24024451 - 24024594
Alignment:
Q  44 tatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctat 143  Q
    ||||||||||||||||| |||||||||||||||| | ||| | ||||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||    
T  24024451 tatgcttgttagctctttgtgtggttttgctatatactagtcataggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactat 24024550  T
Q  144 cacttgctccacacatcattggtttattctcattggtgtgaaggtt 189  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  24024551 cacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 24024594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 12396861 - 12396730
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  12396861 ctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 12396762  T
Q  156 acatcattggtttattctcattggtgtgaaggtt 189  Q
    |||||||| ||||||| |||||||||||||||||    
T  12396761 acatcatt-gtttatt-tcattggtgtgaaggtt 12396730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 12406281 - 12406150
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  12406281 ctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 12406182  T
Q  156 acatcattggtttattctcattggtgtgaaggtt 189  Q
    |||||||| ||||||| |||||||||||||||||    
T  12406181 acatcatt-gtttatt-tcattggtgtgaaggtt 12406150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 31109725 - 31109849
Alignment:
Q  62 gtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||||||||||| |||  ||||| |||||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||| ||||||||    
T  31109725 gtgtggttttgctatacactag--ttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatc 31109822  T
Q  161 attggtttattctcattggtgtgaaggtt 189  Q
    ||| ||||||| |||||||||||||||||    
T  31109823 att-gtttatt-tcattggtgtgaaggtt 31109849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 4866667 - 4866548
Alignment:
Q  68 ttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtt 167  Q
    |||||||||||| ||| ||  | ||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| |||    
T  4866667 ttttgctatacactagtctaggactgttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcatt-gtt 4866569  T
Q  168 tattctcattggtgtgaaggtt 189  Q
    |||| |||||||||||||||||    
T  4866568 tatt-tcattggtgtgaaggtt 4866548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 20357672 - 20357797
Alignment:
Q  36 ttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcataga 133  Q
    ||||||||| ||||| |||| ||||| ||||||||||||| |||| ||| ||  ||||||||| ||||||||| |||||||| |||||||  ||||||||    
T  20357672 ttatcttgtttgctttgttatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttagcttggagaccatttgg-ctcataga 20357770  T
Q  134 ttatctctatcacttgctccacacatc 160  Q
    ||| | ||||| |||||||||||||||    
T  20357771 ttaccactatctcttgctccacacatc 20357797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 2057871 - 2057806
Alignment:
Q  94 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||||||||||||||  ||||||| |||||||||||| | ||||| |||||||||||||||    
T  2057871 ttttgttgttgtttgcttggaaaccatttg-actcatagattaccactatctcttgctccacacatc 2057806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 43988580 - 43988762
Alignment:
Q  35 tttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagat 134  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  43988580 tttatcttgtatgcttgttagctcttagtgtggttgtgctatacattaggcttaggctgttttgttgttgttagcttggaagccatttgctctcatagat 43988679  T
Q  135 tatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaa 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43988680 tatctctatcacttgctccacacatcattgatttattctcattggcgtgaaggttcattagttgagccggattcacaacaaaa 43988762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 39445479 - 39445288
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  39445479 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 39445382  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaaa 218  Q
      | ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || || || ||||||||||||||||||    
T  39445381 ttcacattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacaaaaa 39445288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 25445195 - 25445382
Alignment:
Q  27 ttttatcgtttatcttgtat--gcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| |||||||||||| |  |||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  25445195 ttttaccgtttatcttgtttacgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 25445292  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 214  Q
      ||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| || || || ||||||||||||||    
T  25445293 ttctcattgattatcactatcgcttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaaca 25445382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 44023997 - 44024140
Alignment:
Q  44 tatgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 142  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||  ||||| ||||||| |||    
T  44023997 tatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttgttctcattgattatcacta 44024094  T
Q  143 tcacttgctccacacatcattggtttattctcattggtgtgaaggtt 189  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  44024095 tcagttgctccacacatcattggtttatt-tcattggtgtgaaggtt 44024140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 1055117 - 1055304
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||  ||||||| | ||||||    
T  1055117 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtaagcttggaagacatttg 1055214  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 214  Q
      | ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  | || || ||||||||||||||    
T  1055215 ttcacattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgattgtagaaccggattcacaaca 1055304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 41386650 - 41386566
Alignment:
Q  104 gtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 189  Q
    |||||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41386650 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 41386566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 41398147 - 41398055
Alignment:
Q  96 ttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 189  Q
    |||||||||||||||||||| |||| ||  ||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  41398147 ttgttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacataattggtttatt-tcattggtgtgaaggtt 41398055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 19349270 - 19349069
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttgg 113  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  19349270 tttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttgg 19349171  T
Q  114 aggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaa 212  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  19349170 aggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaa 19349072  T
Q  213 caa 215  Q
    |||    
T  19349071 caa 19349069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 19344412 - 19344212
Alignment:
Q  14 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttgg 113  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  19344412 tttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttgg 19344313  T
Q  114 aggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaa 212  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  19344312 aggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaa 19344214  T
Q  213 ca 214  Q
    ||    
T  19344213 ca 19344212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 62 - 214
Target Start/End: Complemental strand, 32246728 - 32246577
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 161  Q
    |||||||||||||||||| ||| ||  | |||||||||||||||| |||||||| |||||||  ||||||||||| | ||||||||||||||||||||||    
T  32246728 gtgtggttttgctatacactagtctaggactgttttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatca 32246629  T
Q  162 ttggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 214  Q
    |||||||||| |||||||||||||||||  || || || ||||||||||||||    
T  32246628 ttggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 32246577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 39812129 - 39812255
Alignment:
Q  62 gtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 160  Q
    |||||||||||||||||| ||| |||| |||||||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||||||||||    
T  39812129 gtgtggttttgctatacactag-cttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 39812227  T
Q  161 attggtttattctcattggtgtgaaggtt 189  Q
     |||||||||| |||||||||||||||||    
T  39812228 tttggtttatt-tcattggtgtgaaggtt 39812255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 44312759 - 44312887
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| | | ||  ||| | ||||||||||||||||||||| |||||||  ||||| ||||| | ||||||||||||||||    
T  44312759 ctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccac 44312858  T
Q  156 acatcattggtttattctcattggtgtgaag 186  Q
    |||||||| ||||||| ||||||||||||||    
T  44312859 acatcatt-gtttatt-tcattggtgtgaag 44312887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 9296540 - 9296651
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctg-ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcact 147  Q
    |||||| ||||| ||||||||||||| |||| ||||||  ||||| |||||||||||||||||||||  ||||||   ||||||||||| | ||| |  |    
T  9296540 ttgttatctctttgtgtggttttgctctacactagactagggctgtttttgttgttgtttgcttggaaaccattt-tgctcatagattaccactaccttt 9296638  T
Q  148 tgctccacacatc 160  Q
    |||||||||||||    
T  9296639 tgctccacacatc 9296651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 14291446 - 14291380
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctg-ttttgttgttgtttgcttgga 114  Q
    |||||| ||||| ||||||||||||| |||||||| ||  ||||| |||||||||||||||||||||    
T  14291446 ttgttatctctttgtgtggttttgctctacattagtctagggctgtttttgttgttgtttgcttgga 14291380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 18855706 - 18855519
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  18855706 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 18855609  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 214  Q
      ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  | || || ||||||||||||||    
T  18855608 ttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgcttgtagaaccggattcacaaca 18855519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 3813986 - 3813816
Alignment:
Q  44 tatgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 142  Q
    ||||||||||||||||| |||||||||| || ||||| ||| ||  | ||||||||||||||||||||||||| |||||||| ||||| ||||| | |||    
T  3813986 tatgcttgttagctctttgtgtggtttttgcgatacactagtctaggactgttttgttgttgtttgcttggagaccatttgctctcattgattaccacta 3813887  T
Q  143 tcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  || || || ||||||||||||||    
T  3813886 tcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 3813816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 215
Target Start/End: Original strand, 9224542 - 9224699
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  9224542 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 9224641  T
Q  156 acatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 215  Q
    |||||||| ||||||| |||||||||||||||||  ||  |||| |||||||||||||||    
T  9224642 acatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaacaa 9224699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 5732640 - 5732454
Alignment:
Q  28 tttatcgtttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgca 125  Q
    |||| |||||||||||| ||||| |||||||||| |||||||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||      
T  5732640 tttaccgtttatcttgtttgctttgttagctctttgtgtggttttactatacactag-cttagggctgttttgttgttgttagcttggagaccatttgtt 5732542  T
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaaa 218  Q
    ||||| ||||| | | |||||||||||||||||||||||   |||| |||||||||||||||||  ||  | || ||||||||||||||||||    
T  5732541 ctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtttctt--tggaaccggattcacaacaaaaa 5732454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 9229329 - 9229460
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  9229329 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 9229428  T
Q  156 acatcattggtttattctcattggtgtgaaggtt 189  Q
    |||||||| ||||||| |||||||||||||||||    
T  9229429 acatcatt-gtttatt-tcattggtgtgaaggtt 9229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 214
Target Start/End: Original strand, 45347959 - 45348109
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 161  Q
    ||||||||||||| |||| ||| ||  | |||||||||||||||| ||||| || |||||||  ||||||||||| | ||||||||||||||||||||||    
T  45347959 gtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatca 45348058  T
Q  162 ttggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 214  Q
    || ||||||| |||||||||||||||||  || || || ||||||||||||||    
T  45348059 tt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 45348109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 214
Target Start/End: Original strand, 45357438 - 45357588
Alignment:
Q  62 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 161  Q
    ||||||||||||| |||| ||| ||  | |||||||||||||||| ||||| || |||||||  ||||||||||| | ||||||||||||||||||||||    
T  45357438 gtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatca 45357537  T
Q  162 ttggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 214  Q
    || ||||||| |||||||||||||||||  || || || ||||||||||||||    
T  45357538 tt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 45357588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 56146840 - 56146974
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  56146840 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 56146939  T
Q  149 gctccacacatcattggtttattctcattggtgtgaa 185  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  56146940 gctccacacatcatt-gtttatt-tcattggtgtgaa 56146974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 51520413 - 51520280
Alignment:
Q  49 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 148  Q
    |||||| ||||| || ||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  51520413 ttgttatctctttgtatggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 51520314  T
Q  149 gctccacacatcattggtttattctcattggtgtga 184  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  51520313 gctccacacatcatt-gtttatt-tcattggtgtga 51520280  T

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Target: scaffold0464 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 342 - 154
Alignment:
Q  27 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 123  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  342 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 245  T
Q  124 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 215  Q
      ||||| ||||||| | ||||||||||||||||||| |||||||||| |||||||||||||||||| || || || |||||||||||||||    
T  244 ttctcattgattatcaccatcacttgctccacacatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacaa 154  T

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Target: scaffold0355 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 9764 - 9907
Alignment:
Q  44 tatgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 142  Q
    ||||||||||||||||| |||||||||||||||| | ||| |||||| |||||||||||||||||| |||||| |||||||| ||||| ||||||| |||    
T  9764 tatgcttgttagctctt-gtgtggttttgctatatactag-cttagggctgttttgttgttgtttggttggagaccatttgctctcattgattatcacta 9861  T
Q  143 tcacttgctccacacatcattggtttattctcattggtgtgaaggtt 189  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  9862 tcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 9907  T

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Target: scaffold0355; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 13 - 148
Alignment:
Q  44 tatgcttgttagctcttagtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 142  Q
    |||||||||||||||   |||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||| |||||||| ||||| |||      ||    
T  13 tatgcttgttagctc---gtgtggttttgctatacactag-cttagggctgttttgttgttgtttacttggagaccatttgctctcattgat------ta 102  T
Q  143 tcacttgctccacacatcattggtttattctcattggtgtgaaggtt 189  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||    
T  103 tcacttgctccacacatcattggtttatt-taattggtgtgaaggtt 148  T

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Target: scaffold0135 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 35197 - 35328
Alignment:
Q  56 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 155  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  35197 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 35296  T
Q  156 acatcattggtttattctcattggtgtgaaggtt 189  Q
    |||||||| ||||||| |||||||||||||||||    
T  35297 acatcatt-gtttatt-tcattggtgtgaaggtt 35328  T

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Target: scaffold0127 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 34132 - 34216
Alignment:
Q  104 gtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 189  Q
    |||||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34132 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 34216  T

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Target: scaffold0777 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 6341 - 6292
Alignment:
Q  166 tttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6341 tttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 6292  T

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Target: scaffold0479 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 13228 - 13140
Alignment:
Q  126 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 215  Q
    ||||| ||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||||| || || || |||||||||||||||    
T  13228 ctcattgattatcactatcacttgctccacatatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacaa 13140  T

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