View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0365_1D_low_12 (Length: 223)

Name: NF0365_1D_low_12
Description: NF0365_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0365_1D_low_12
NF0365_1D_low_12
[»] chr2 (5 HSPs)
chr2 (9-210)||(31902205-31902406)
chr2 (5-210)||(18681150-18681365)
chr2 (6-194)||(12793530-12793725)
chr2 (30-124)||(915330-915424)
chr2 (79-199)||(9926373-9926498)
[»] chr1 (7 HSPs)
chr1 (6-196)||(4651865-4652062)
chr1 (6-210)||(2987902-2988114)
chr1 (7-124)||(35250153-35250270)
chr1 (65-129)||(11839368-11839432)
chr1 (68-124)||(17993996-17994052)
chr1 (37-88)||(16577378-16577429)
chr1 (39-86)||(28395004-28395051)
[»] chr7 (3 HSPs)
chr7 (6-192)||(46133085-46133271)
chr7 (6-199)||(38485641-38485844)
chr7 (52-191)||(9349841-9349986)
[»] chr8 (6 HSPs)
chr8 (7-199)||(35062544-35062742)
chr8 (38-199)||(10552385-10552552)
chr8 (6-210)||(41791048-41791259)
chr8 (16-210)||(30235911-30236112)
chr8 (9-122)||(32945583-32945695)
chr8 (6-63)||(17720644-17720701)
[»] chr5 (3 HSPs)
chr5 (6-199)||(31721763-31721963)
chr5 (8-197)||(36979004-36979191)
chr5 (134-194)||(24436033-24436095)
[»] chr3 (2 HSPs)
chr3 (34-210)||(30935171-30935356)
chr3 (6-210)||(1652670-1652881)
[»] chr6 (5 HSPs)
chr6 (19-194)||(12794203-12794385)
chr6 (6-121)||(26215898-26216014)
chr6 (30-63)||(9224152-9224185)
chr6 (7-68)||(26534648-26534709)
chr6 (158-198)||(27774836-27774876)
[»] chr4 (3 HSPs)
chr4 (30-124)||(43373971-43374065)
chr4 (6-101)||(35800575-35800670)
chr4 (8-124)||(19432130-19432246)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 31902406 - 31902205
Alignment:
Q  9 tgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggacttg 108  Q
    |||||||| |||||||  || |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  31902406 tgttcctttggtggaccggaggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtgactcagtgttggtgttgaggacttg 31902307  T
Q  109 gttctcttttacaaggtgttcggttagtagtggcgacgagtgtttcaaatgtcgttttttcagtggttggttagtataggagtcagttttatggggtgat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  31902306 gttctcttttacaaggtgttcggttagtagtggcgacgagtgtttcagatgtcgttttttcactggttggttagtataggagtcagttttatgggttgat 31902207  T
Q  209 gt 210  Q
    ||    
T  31902206 gt 31902205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 18681150 - 18681365
Alignment:
Q  5 gtggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgagga 104  Q
    |||||||||||| ||||||  ||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  18681150 gtggtgttcctttggtggatcagaggttgcacggtggtgaaagctgaatgatctttagagaaggagctcttcggatgtggctcaatgttggtgatgagga 18681249  T
Q  105 cttggttctcttttacaa-ggtgttc------ggttagtagtggcgacgagtgtttcaaatgtcg---ttttttcagtggttggttagtataggagtcag 194  Q
    || ||||||||||||||| |||||||      ||| ||| ||||||||||||||||   ||||||   |||||| |||||||||| ||||||||||||||    
T  18681250 ctaggttctcttttacaagggtgttcttttgaggtgagtggtggcgacgagtgttttggatgtcgtgttttttttagtggttggtaagtataggagtcag 18681349  T
Q  195 ttttatggggtgatgt 210  Q
    ||||| ||||||||||    
T  18681350 ttttagggggtgatgt 18681365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 12793725 - 12793530
Alignment:
Q  6 tggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggac 105  Q
    ||||||||||||| |||||  || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |     
T  12793725 tggtgttccttcg-tggaccggaggttgtgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcggtgttggtgatgagaag 12793627  T
Q  106 ttggttctcttttac-aaggtgttc------ggttagtagtggcgacgagtgtttcaaatgtcg-ttttttcagtggttggttagtataggagtcag 194  Q
    |  |||||||||||| |||||||||      ||| |||||||| |||||||| |    |||||| |||||| ||||| ||||||| |||||||||||    
T  12793626 taagttctcttttacaaaggtgttcttttgaggtgagtagtggtgacgagtgatatttatgtcgctttttttagtggctggttagcataggagtcag 12793530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 915424 - 915330
Alignment:
Q  30 gttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggacttggttctcttttacaagg 124  Q
    |||||||||||||||||||| |||||| || ||| |||||||||||||||||| ||||| ||||||||||||||| | |||||||| ||||||||    
T  915424 gttgcgcggtggtggaagctcaatgattttaagaaaaggagttcttcggatgttgctcagtgttggtgatgaggattgggttctctattacaagg 915330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 9926373 - 9926498
Alignment:
Q  79 atgtggctcattgttggtgatgaggacttggttctcttttacaa-ggtgtt------cggttagtagtggcgacgagtgtttcaaatgtcgttttttcag 171  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| ||||||       ||| |||||||||||||||||||    |||||  ||||||||    
T  9926373 atgtggctcgttgttggtgatgaggactgggttctcttttacaagggtgtttttttgaggtgagtagtggcgacgagtgttatggatgtc--tttttcag 9926470  T
Q  172 tggttggttagtataggagtcagtttta 199  Q
    |||| ||| |||||||||||||||||||    
T  9926471 tggtcggtaagtataggagtcagtttta 9926498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 4651865 - 4652062
Alignment:
Q  6 tggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggac 105  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4651865 tggtgttccttcggtggaccggaggttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatggggac 4651964  T
Q  106 ttggttctcttttacaa-ggtgttc------ggttagtagtggcgacgagtgtttcaaatgtcgttttttcagtggttggttagtataggagtcagtt 196  Q
    ||||||||||||||||| |||||||      ||| ||| |||| ||||||||||| | ||||||||||||||||||||||| | ||||||||||||||    
T  4651965 ttggttctcttttacaagggtgttcttttgaggtgagttgtggtgacgagtgttttagatgtcgttttttcagtggttggtaactataggagtcagtt 4652062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 2988114 - 2987902
Alignment:
Q  6 tggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggac 105  Q
    ||||||||||||| | |||  || |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  2988114 tggtgttccttcgatagaccggaggttgtgcggtggtggaagctgaatgatctttagggaaggagttcttcggatgtggctcggtgttggtgatgaggac 2988015  T
Q  106 ttggttctcttttacaa-ggtgttc------ggttagtagtggcgacgagtgtttcaaatgtc-gttttttcagtggttggttagtataggagtcagttt 197  Q
     |||||||||||||||| |||||||      |||  | ||| ||||||||||||   ||||||  ||||||||||||||||| |||||| ||||||||||    
T  2988014 atggttctcttttacaagggtgttctttagaggtgcgaagttgcgacgagtgttatgaatgtcatttttttcagtggttggtaagtatatgagtcagttt 2987915  T
Q  198 tatggggtgatgt 210  Q
    ||  |||||||||    
T  2987914 tagtgggtgatgt 2987902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 35250270 - 35250153
Alignment:
Q  7 ggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggact 106  Q
    |||||||||||||  ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  ||||||||||    
T  35250270 ggtgttccttcggctgaccagaggttacgcggtggtggaagctgaatgatctttagagaaggagttcttcggaggtggcacattgttgaagatgaggact 35250171  T
Q  107 tggttctcttttacaagg 124  Q
     | |||||||||||||||    
T  35250170 ggattctcttttacaagg 35250153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 11839368 - 11839432
Alignment:
Q  65 aaggagttcttcggatgtggctcattgttggtgatgaggacttggttctcttttacaaggtgttc 129  Q
    ||||||||||| |||||||||||  |||||| |||||||| |  ||||||||||||||| |||||    
T  11839368 aaggagttctttggatgtggctcgatgttggggatgaggattgagttctcttttacaagatgttc 11839432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 17994052 - 17993996
Alignment:
Q  68 gagttcttcggatgtggctcattgttggtgatgaggacttggttctcttttacaagg 124  Q
    ||||||||||||||||||||  ||||||||||||||| | ||||| || ||||||||    
T  17994052 gagttcttcggatgtggctcgatgttggtgatgaggattgggttccctattacaagg 17993996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 16577378 - 16577429
Alignment:
Q  37 ggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctca 88  Q
    |||||||||||||||||||||||| ||  ||||| | |||||||||||||||    
T  16577378 ggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctca 16577429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 28395051 - 28395004
Alignment:
Q  39 tggtggaagctgaatgatctttagagaaggagttcttcggatgtggct 86  Q
    ||||||||| ||||||||||||||| ||||||||||||| || |||||    
T  28395051 tggtggaaggtgaatgatctttagaaaaggagttcttcgaatttggct 28395004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 46133271 - 46133085
Alignment:
Q  6 tggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggac 105  Q
    |||||||||||||||||||  || |||||| ||||| ||||||||| ||||||||||| || |||||||| ||||||| |||  |||||||||||| |||    
T  46133271 tggtgttccttcggtggaccggaggttgcgtggtgggggaagctgattgatctttagataaagagttctttggatgtgactcggtgttggtgatgatgac 46133172  T
Q  106 ttggttctcttttacaaggtgttcggttagtagtggcgacgagtgtttcaaatgtcgttttttcagtggttggttagtataggagtc 192  Q
    | ||||||||||||||||||||| ||| ||||||||| ||||||||||   |||||||||||||||||||||||||||||| |||||    
T  46133171 tgggttctcttttacaaggtgtttggtgagtagtggcaacgagtgttttggatgtcgttttttcagtggttggttagtataagagtc 46133085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 38485641 - 38485844
Alignment:
Q  6 tggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggac 105  Q
    ||||||||||||| |||||  || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  38485641 tggtgttccttcgatggaccggaggttgcacggtggtggaagctgaatgatctttagagaaggagttcttcagatgtggctcattgttggtgataaggac 38485740  T
Q  106 ttggttctcttttac-aaggtgttc------ggttagtagtggcgacgagtgtttcaaatgtc---gttttttcagtggttggttagtataggagtcagt 195  Q
    ||||||||||||||| |||||||||      ||| ||| ||||||||||||||||   |||||    ||||||||||||||||| | |||||||||||||    
T  38485741 ttggttctcttttacaaaggtgttcttttgaggtgagttgtggcgacgagtgttttggatgtcatttttttttcagtggttggtaactataggagtcagt 38485840  T
Q  196 ttta 199  Q
    ||||    
T  38485841 ttta 38485844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 9349841 - 9349986
Alignment:
Q  52 atgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggacttggttctcttttacaa-ggtgttc------ggttagtagtggcga 144  Q
    ||||| |||||||||| |||||||||||||||||||  ||||||||||||| | |  |||||||||||||| |||||||      ||| |||||||||||    
T  9349841 atgatatttagagaagaagttcttcggatgtggctcggtgttggtgatgagtattgtgttctcttttacaagggtgttcttttggggtgagtagtggcga 9349940  T
Q  145 cgagtgtttcaaatgtcgttttttcagtggttggttagtataggagt 191  Q
    ||||||||    |||||||||| | |||||||||| |||||||||||    
T  9349941 cgagtgttatggatgtcgttttct-agtggttggtaagtataggagt 9349986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 35062544 - 35062742
Alignment:
Q  7 ggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggact 106  Q
    |||||||||||||||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||    
T  35062544 ggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgatctttagagaaggagttcttcggaggtggcacaatgttggtgatgaggact 35062643  T
Q  107 tggttctcttttacaa-ggtgttc------ggttagtagtggcgacgagtgtttcaaatgtcgttttttcagtggttggttagtataggagtcagtttta 199  Q
     ||||||||||||||| |||||||      ||| |||||||||||||||||||    |||| ||||||| ||||||||||||||||| ||||||||||||    
T  35062644 gggttctcttttacaagggtgttctcttgaggtgagtagtggcgacgagtgttatggatgttgtttttt-agtggttggttagtatatgagtcagtttta 35062742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 10552385 - 10552552
Alignment:
Q  38 gtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggacttggttctcttttacaa-ggtgttc------g 130  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||| |||||||||| ||||||||||||||| |||||||      |    
T  10552385 gtggtggaagctgaatgatctttagagaagaagttcttcggaggtggcacagtgttggagatgaggactgggttctcttttacaagggtgttcttttgag 10552484  T
Q  131 gttagtagtggcgacgagtgtttcaaatgtcgttttttcagtggttggttagtataggagtcagtttta 199  Q
    || |||||||||||||||| ||    |||||||||||| |||||||| |||||||| ||||||||||||    
T  10552485 gtgagtagtggcgacgagttttatggatgtcgtttttt-agtggttgcttagtatatgagtcagtttta 10552552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 41791259 - 41791048
Alignment:
Q  6 tggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggac 105  Q
    |||||||  |||| ||||||||| ||||||||||||||||||| || |||| ||| || |||||||||||| |||||| |||| | ||||||||||||||    
T  41791259 tggtgttatttcgatggactagaggttgcgcggtggtggaagcggattgatatttggaaaaggagttcttcagatgtgactcacttttggtgatgaggac 41791160  T
Q  106 ttggttctcttttacaa-ggtgttc------ggttagtagtggcgacgagtgtttcaaatgtcgttttttcagtggttggttagtataggagtcagtttt 198  Q
    | | | ||||||||||| |||||||      ||| |||||||| || ||| |||   ||||||||||||||||||||  || |||||| |||||||||||    
T  41791159 tggttcctcttttacaagggtgttcttttgaggtgagtagtggtgatgagggttatgaatgtcgttttttcagtggtcagtaagtatatgagtcagtttt 41791060  T
Q  199 atggggtgatgt 210  Q
    | ||||||||||    
T  41791059 agggggtgatgt 41791048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 30236112 - 30235911
Alignment:
Q  16 tcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggacttggttctct 115  Q
    ||||||||| |||  |||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||| |||  |||||||  |||||||| | ||||||    
T  30236112 tcggtggaccagagattgcgcagtggtggaagctgattgatctttagaaaagaagttctttggatgtgactcggtgttggtattgaggactggtttctct 30236013  T
Q  116 tttac-aaggtgttc------ggttagtagtggcgacgagtgtttcaaatgtcgttttttcagtggttggttagtataggagtcagttttatggggtgat 208  Q
     || | | |||||||      ||| ||||||||||| |||||||    ||||||||| || | |||| ||||| ||||||||||||||||| ||||||||    
T  30236012 cttgctagggtgttcgtttgtggtgagtagtggcgatgagtgttatggatgtcgtttatttaatggtcggttaatataggagtcagttttagggggtgat 30235913  T
Q  209 gt 210  Q
    ||    
T  30235912 gt 30235911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 32945695 - 32945583
Alignment:
Q  9 tgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggacttg 108  Q
    ||||| ||||||||||| || || || || || |||||||||||||||||||||| ||| |||||||| |||||| |||  |||||||||||| |||| |    
T  32945695 tgttctttcggtggactggaggtcgcacg-tgatggaagctgaatgatctttagaaaagaagttcttcagatgtgactcggtgttggtgatgatgactgg 32945597  T
Q  109 gttctcttttacaa 122  Q
     |||| ||||||||    
T  32945596 tttcttttttacaa 32945583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 17720701 - 17720644
Alignment:
Q  6 tggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttaga 63  Q
    |||||||| ||||||||||| || |||| | ||||||||||| ||| |||||||||||    
T  17720701 tggtgttctttcggtggacttgaggttgagaggtggtggaagttgattgatctttaga 17720644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 31721763 - 31721963
Alignment:
Q  6 tggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggac 105  Q
    |||||||||||| ||||||  ||||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||  ||||||||| ||||||    
T  31721763 tggtgttccttcagtggaccggatgttgcgcggtggtggaagttgattgatctttagagaatgagttctttggatgtggctcgatgttggtgacgaggac 31721862  T
Q  106 ttggttctcttttacaa-ggtgtt------cggttagtagtggcgacgagtgtttcaaatgtcgttttttcagtggttggttagtataggagtcagtttt 198  Q
    |  |||||||||||||| ||||||       ||| |||||||||||||||||||    ||||||||||||||||||||||| ||||||||||||||||||    
T  31721863 tgagttctcttttacaagggtgtttttttgaggtgagtagtggcgacgagtgttatggatgtcgttttttcagtggttggtaagtataggagtcagtttt 31721962  T
Q  199 a 199  Q
    |    
T  31721963 a 31721963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 36979004 - 36979191
Alignment:
Q  8 gtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggactt 107  Q
    |||| ||||||||||||  |||||| || |||||  |||||||||||||| ||| |||| |||||||| ||||||||||   ||||||| || ||||||     
T  36979004 gtgtcccttcggtggacg-gatgttacgtggtgggagaagctgaatgatcattaaagaatgagttctttggatgtggcttggtgttggtaataaggacta 36979102  T
Q  108 ggttctcttttacaaggtgttcggttagtagtggcgacgagtgtttcaaatgtcgttttttcagtggttggttagtataggagtcagttt 197  Q
    |||||||||||||| |||||| ||| |||||||||||| |||||||   |||| |||||||||||||||||| |||||| ||||||||||    
T  36979103 ggttctcttttaca-ggtgttaggtgagtagtggcgaccagtgttttggatgttgttttttcagtggttggtaagtataagagtcagttt 36979191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 24436033 - 24436095
Alignment:
Q  134 agtagtggcgacgagtgtttcaaatgtcgtttt--ttcagtggttggttagtataggagtcag 194  Q
    |||||||||||||||||||  | ||||||||||  ||||||||||||| ||| ||||||||||    
T  24436033 agtagtggcgacgagtgttatagatgtcgttttttttcagtggttggtaagtttaggagtcag 24436095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 210
Target Start/End: Complemental strand, 30935356 - 30935171
Alignment:
Q  34 cgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggacttggttctcttttacaa-ggtgttc--- 129  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||  |||||||||||||| |||||||       
T  30935356 cgcggtggtggaagctgaatgatctttagaaaaggagttcttcggatgtggctcggtgttggtgatgaggactgagttctcttttacaagggtgttcttt 30935257  T
Q  130 ---ggttagtagtggcgacgagtgtttcaaatgtcgtttttt--cagtggttggttagtataggagtcagttttatggggtgatgt 210  Q
       ||| |||||||||||||||||||  | ||||||||||||  | |||| |||| |||||| |||||||||||| ||||||||||    
T  30935256 tgaggtgagtagtggcgacgagtgttatagatgtcgtttttttccggtggctggtaagtataagagtcagttttagggggtgatgt 30935171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 1652881 - 1652670
Alignment:
Q  6 tggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggac 105  Q
    |||||||| ||||||||||  || |||  ||||||| ||||| ||||||||||||||| ||||||||| ||| || ||||||  |||||||||| ||||     
T  1652881 tggtgttctttcggtggaccggaggttaagcggtggcggaagttgaatgatctttagaaaaggagttcctcgaatttggctcggtgttggtgataaggaa 1652782  T
Q  106 ttggttctcttttacaa-ggtgttc------ggttagtagtggcgacgagtgtttcaaatgtcgttttttcagtggttggttagtataggagtcagtttt 198  Q
    | | | ||||||| ||| |||||||      ||| ||||||| ||| |||||||   ||||||||||||| |||||||| | |  |||| ||||||||||    
T  1652781 tggttcctctttttcaagggtgttcttttgaggtgagtagtgacgatgagtgttatgaatgtcgtttttttagtggttgttaaacatagaagtcagtttt 1652682  T
Q  199 atggggtgatgt 210  Q
    | ||||||||||    
T  1652681 agggggtgatgt 1652670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 12794203 - 12794385
Alignment:
Q  19 gtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggacttggttctctttt 118  Q
    ||||||| || ||||||||||||||||||| || ||||||||||| ||||| |||||| |||||| |||  |||||| | |||||||| | |||||||||    
T  12794203 gtggactggaggttgcgcggtggtggaagcagattgatctttagaaaaggatttcttcagatgtgactcggtgttggggttgaggactggtttctctttt 12794302  T
Q  119 acaa-ggtgttc------ggttagtagtggcgacgagtgtttcaaatgtcgttttttcagtggttggttagtataggagtcag 194  Q
    | || |||||||      ||| ||||||||| | |||||||   |||||||||||||||||||| | | ||||||||||||||    
T  12794303 ataagggtgttcttttgaggtgagtagtggcaatgagtgttatgaatgtcgttttttcagtggtcgataagtataggagtcag 12794385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 26216014 - 26215898
Alignment:
Q  6 tggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagtt-cttcggatgtggctcattgttggtgatgagga 104  Q
    |||||||| || |||||||  ||  ||||||||||||||||||||| |||||||| || |||||||| ||||  |||||||||| |||||||||||||||    
T  26216014 tggtgttcttttggtggaccggagattgcgcggtggtggaagctgattgatctttggaaaaggagtttcttcaaatgtggctcagtgttggtgatgagga 26215915  T
Q  105 cttggttctcttttaca 121  Q
    || | ||||||||||||    
T  26215914 ctagtttctcttttaca 26215898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 9224152 - 9224185
Alignment:
Q  30 gttgcgcggtggtggaagctgaatgatctttaga 63  Q
    |||| |||||||||||||||||||||||||||||    
T  9224152 gttgtgcggtggtggaagctgaatgatctttaga 9224185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 26534709 - 26534648
Alignment:
Q  7 ggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaagg 68  Q
    ||||||| ||||||||||   | |||| ||||||||||||||||| ||||||||||| ||||    
T  26534709 ggtgttctttcggtggaccgaaggttgtgcggtggtggaagctgattgatctttagaaaagg 26534648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 27774836 - 27774876
Alignment:
Q  158 tgtcgttttttcagtggttggttagtataggagtcagtttt 198  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  27774836 tgtcgttttttcagtggttggtaaatatagaagtcagtttt 27774876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 43374065 - 43373971
Alignment:
Q  30 gttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggacttggttctcttttacaagg 124  Q
    |||||||||||||||||||||| ||||||||||| || ||||||||| || ||| |||  |||||||||||| |||||| |||||||||||||||    
T  43374065 gttgcgcggtggtggaagctgattgatctttagaaaatgagttcttcagaggtgactcggtgttggtgatgatgacttgtttctcttttacaagg 43373971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 35800575 - 35800670
Alignment:
Q  6 tggtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatga 101  Q
    |||||||| ||||||||||  || ||| ||||||||||||| ||||||||||||| |  ||||||||||| ||||||||||| |||||||||||||    
T  35800575 tggtgttctttcggtggaccggaggtttcgcggtggtggaacctgaatgatctttggtaaaggagttctttggatgtggctcgttgttggtgatga 35800670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 19432130 - 19432246
Alignment:
Q  8 gtgttccttcggtggactagatgttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgaggactt 107  Q
    |||||| || ||||||| |||  |||||| ||||||||||||||||||| ||| ||  ||||||| ||||| |||| ||   |||||||||||||||||     
T  19432130 gtgttcttttggtggaccagagattgcgcagtggtggaagctgaatgatatttggaagaggagttattcggttgtgacttggtgttggtgatgaggactg 19432229  T
Q  108 ggttctcttttacaagg 124  Q
      |||||||||||||||    
T  19432230 atttctcttttacaagg 19432246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 992 times since January 2019
Visitors: 3157