View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0365_1D_low_13 (Length: 222)
Name: NF0365_1D_low_13
Description: NF0365_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0365_1D_low_13 |
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[»] scaffold0625 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 21966567 - 21966726
Alignment:
Q |
58 |
aggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtc |
157 |
Q |
|
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
21966567 |
aggcttaattatatatttggtcccttaaataattaccaaaattcgttttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtc |
21966666 |
T |
 |
Q |
158 |
catcgtttatgtccttttcgtcaaacattaattaagaaatgttaagtctcacacatggtcg |
218 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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|
T |
21966667 |
catcgtttatgtcctttccgtcaaacattaattaagaaatg-taagtctcacacatggtcg |
21966726 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 21989003 - 21989162
Alignment:
Q |
58 |
aggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtc |
157 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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T |
21989003 |
aggcttaattatatatttggtcccttaaataattaccaaaattcgttttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtc |
21989102 |
T |
 |
Q |
158 |
catcgtttatgtccttttcgtcaaacattaattaagaaatgttaagtctcacacatggtcg |
218 |
Q |
|
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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|
T |
21989103 |
catcgtttatgtcctttccgtcaaacattaattaagaaatg-taagtctcacacatggtcg |
21989162 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 21967144 - 21966981
Alignment:
Q |
55 |
tttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaattaagattc |
154 |
Q |
|
|
|||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
T |
21967144 |
tttaggcttaattatatatctggtccctcaaataattaccaatattcattttggtcccttaattaatttaagtttcattttggtcctttaattaagattc |
21967045 |
T |
 |
Q |
155 |
gtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagtctcacacatggtcg |
218 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
T |
21967044 |
gtccatcgtttatgtcctttccgtcaaacattaattaagaaacgttaagtctcacacatggtcg |
21966981 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 21989580 - 21989417
Alignment:
Q |
55 |
tttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaattaagattc |
154 |
Q |
|
|
|||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
T |
21989580 |
tttaggcttaattatatatctggtccctcaaataattaccaatattcattttggtcccttaattaatttaagtttcattttggtcctttaattaagattc |
21989481 |
T |
 |
Q |
155 |
gtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagtctcacacatggtcg |
218 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
T |
21989480 |
gtccatcgtttatgtcctttccgtcaaacattaattaagaaacgttaagtctcacacatggtcg |
21989417 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 45421100 - 45421192
Alignment:
Q |
55 |
tttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaatt |
147 |
Q |
|
|
|||||||| ||||| |||| ||||||||||| ||||| | || ||| ||||||||| |||||||| |||||| |||| ||||||||||| |
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|
T |
45421100 |
tttaggctaaattacatatttggtcccttaattaatttctaagtttcactttggtcccctaattaataaaagtttcgttttagtcctttaatt |
45421192 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 20487361 - 20487202
Alignment:
Q |
59 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtcc |
158 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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|
T |
20487361 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtctcattttggtcctttaattaagatccgtcc |
20487262 |
T |
 |
Q |
159 |
atcgtttatgtccttttcgtcaaacattaattaagaaatgttaagtctcacacatggtcg |
218 |
Q |
|
|
|||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |
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|
T |
20487261 |
atcgtttatgtcctttccgtcaaactttaattaagaaacgttaagtctcacacatggtcg |
20487202 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 20481638 - 20481799
Alignment:
Q |
55 |
tttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaattaagattc |
154 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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|
T |
20481638 |
tttaggcttaattatatatctggtcccttaaataattaccaaaattcggtttggtcccttatttaattttagtctcattttggtcctttaattaagattc |
20481737 |
T |
 |
Q |
155 |
gtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagtctcacacatggt |
216 |
Q |
|
|
|||||||||||||||||||| |||||||| |||||||||||| | ||||||||||||||||| |
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|
T |
20481738 |
gtccatcgtttatgtcctttccgtcaaactttaattaagaaacgctaagtctcacacatggt |
20481799 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 22970091 - 22970177
Alignment:
Q |
59 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaa |
145 |
Q |
|
|
|||||||||||||| |||||||||||||||||| ||| ||| ||||| ||| | ||||||||| | | || ||||||||||||| |
|
|
T |
22970091 |
ggcttaattatataaatggtcccttaaataattatgaaatttcaatttggcccccttattaattttcgctccaatttggtcctttaa |
22970177 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 23818303 - 23818217
Alignment:
Q |
59 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaa |
145 |
Q |
|
|
|||||||||||||| |||||||||||||||||| ||| ||| ||||| ||| | ||||||||| | | || ||||||||||||| |
|
|
T |
23818303 |
ggcttaattatataaatggtcccttaaataattatgaaatttcaatttggcccccttattaattttcgctccaatttggtcctttaa |
23818217 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 24860329 - 24860167
Alignment:
Q |
56 |
ttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaattaagattcg |
155 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| | || |
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|
T |
24860329 |
ttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattatttttagactcattttggtcctttaattaagctccg |
24860230 |
T |
 |
Q |
156 |
tccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagtctcacacatggtcg |
218 |
Q |
|
|
||||||||||||| ||||| ||||||| |||||| |||| ||||||||||||| ||||||| |
|
|
T |
24860229 |
tccatcgtttatgccctttccgtcaaattttaattttgaaacgttaagtctcacatatggtcg |
24860167 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 24858944 - 24859099
Alignment:
Q |
59 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtcc |
158 |
Q |
|
|
||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||| |
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|
T |
24858944 |
ggcttaattatatatctaggcc-ttaaataattatcaaaattcgttttggtcccttaattatttttaggttcattttggtcctttaattaagctccgtcc |
24859042 |
T |
 |
Q |
159 |
atcgtttatgtccttttcgtcaaacattaattaagaaatgttaagtctcacacatgg |
215 |
Q |
|
|
||||||| ||| |||| ||| ||| ||| |||||||||||||||||||||||||||| |
|
|
T |
24859043 |
atcgtttttgttctttccgttaaaaatttattaagaaatgttaagtctcacacatgg |
24859099 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 42127358 - 42127446
Alignment:
Q |
57 |
taggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaa |
145 |
Q |
|
|
|||||||||||| ||| |||||||||||||||||| | | ||| ||||||||| | | ||||||| ||| ||||| |||||||||| |
|
|
T |
42127358 |
taggcttaattacataaatggtcccttaaataattatgagatttcaatttggtccccttaataattttcgttccatttcggtcctttaa |
42127446 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 11384186 - 11384278
Alignment:
Q |
53 |
aatttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaa |
145 |
Q |
|
|
|||||||||||||||||||| |||||||||||||||||| | | ||| ||||||||| | | ||||||| ||| ||||| |||||||||| |
|
|
T |
11384186 |
aatttaggcttaattatataaatggtcccttaaataattatgagatttcaatttggtcccattaataattttcgttccatttcggtcctttaa |
11384278 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 44491718 - 44491805
Alignment:
Q |
58 |
aggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaa |
145 |
Q |
|
|
||||||||||| ||| |||||||||||||||||| | | ||| ||||||||| | ||||||||| | ||||||||||||||||| |
|
|
T |
44491718 |
aggcttaattacataaatggtcccttaaataattatgagatttcaatttggtcccattattaattttcgcctcattttggtcctttaa |
44491805 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0625 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0625
Description:
Target: scaffold0625; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 8066 - 8000
Alignment:
Q |
55 |
tttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaat |
121 |
Q |
|
|
|||||||||||||| || | |||||||||||||||||| ||| ||| |||||||||||||||||| |
|
|
T |
8066 |
tttaggcttaattacatctttggtcccttaaataattatgaaatttcactttggtcccttaattaat |
8000 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 18993631 - 18993697
Alignment:
Q |
55 |
tttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaat |
121 |
Q |
|
|
|||||||||||||| || | |||||||||||||||||| ||| ||| |||||||||||||||||| |
|
|
T |
18993631 |
tttaggcttaattacatctttggtcccttaaataattatgaaatttcactttggtcccttaattaat |
18993697 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 48678145 - 48678058
Alignment:
Q |
58 |
aggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaa |
145 |
Q |
|
|
|||||| |||||||| |||| ||||||||||||| | | |||| ||||||||||| ||||||||| | | |||||||||| ||||| |
|
|
T |
48678145 |
aggctttattatataattggttccttaaataattatgagatttcgatttggtccctttattaattttcgctccattttggtcatttaa |
48678058 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 28240879 - 28240793
Alignment:
Q |
59 |
ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtttcattttggtcctttaa |
145 |
Q |
|
|
|||||||||| ||| |||||||||||||||||| ||| || ||||||||| | ||||||||| || |||||||||||||||| |
|
|
T |
28240879 |
ggcttaattacataaatggtcccttaaataattatgaaattttaatttggtccccttattaattttcgtcccattttggtcctttaa |
28240793 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 3833504 - 3833541
Alignment:
Q |
55 |
tttaggcttaattatatatctggtcccttaaataatta |
92 |
Q |
|
|
|||||||||||||||||| |||||||||||||||||| |
|
|
T |
3833504 |
tttaggcttaattatataattggtcccttaaataatta |
3833541 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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