View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0365_1D_low_6 (Length: 304)
Name: NF0365_1D_low_6
Description: NF0365_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365_1D_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 46894317 - 46894498
Alignment:
| Q |
24 |
cgtattgcctctaggattcatgttgcctacaatccagaacaagcttattttttatatggcactataataatctaaagaaacataataaactcaacgaatt |
123 |
Q |
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| T |
46894317 |
cgtattgcctctaggattcatgttgcctacaatccagaacaagcttattttttatatggcactataataatctaaagaaacataataaactcaacgaatt |
46894416 |
T |
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| Q |
124 |
tataaggatcatattgnnnnnnngtttgactattgttcttaccaaatcactttttgaaacatttcaataaacaaaatatttt |
205 |
Q |
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| T |
46894417 |
tataaggatcatattgtttttttgtttgactattgttcttaccaaatcactttttgaaacatttcaataaacataatatttt |
46894498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 46894561 - 46894646
Alignment:
| Q |
203 |
tttcatttttcagaatcaaattaacacatcaagaaaaacaaataacaactcttgtagcaccaacacttctcaacttgtctgatgtc |
288 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46894561 |
tttcatttttcagaatcaaattaacagatcaagaaaaacaaataacaacttttgtagcaccaacacttctcaacttgtctgatgtc |
46894646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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