View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0365_1D_low_9 (Length: 253)
Name: NF0365_1D_low_9
Description: NF0365_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365_1D_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 32747014 - 32746782
Alignment:
| Q |
12 |
atgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgattttccacattgccttagcaacttgacaaacctccgagtacttgatttat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32747014 |
atgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgattttccacattgccttagcaacttgacaaacctccaagtacttgatttat |
32746915 |
T |
|
| Q |
112 |
cctccaataattttgttggaaatattccatctttcatcactagtctcaagtctcttgaatatctatctctctttgataccaactttgatggaattttctc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32746914 |
cctccaataattttgttggaaatattccatctttcatcactagtctcaagtctcttgaatatctatctctctttgataccaactttgatggaattttctc |
32746815 |
T |
|
| Q |
212 |
attcagttctttgactaatcattctaaacttga |
244 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32746814 |
attcagttctttgactaatcattctaaacttga |
32746782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 4914003 - 4913771
Alignment:
| Q |
12 |
atgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgattttccacattgccttagcaacttgacaaacctccgagtacttgatttat |
111 |
Q |
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||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||| || |||||||| |||||||||| |||| ||||||||||||||| |
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| T |
4914003 |
atgaagaatctgcaggaacttgacctcagcagaaatggaatgagtggttattttcctcaatgccttagaaacttgacaagcctcagagtacttgatttat |
4913904 |
T |
|
| Q |
112 |
cctccaataattttgttggaaatattccatctttcatcactagtctcaagtctcttgaatatctatctctctttgataccaactttgatggaattttctc |
211 |
Q |
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|||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4913903 |
cctcaaataattttgttggaaacattccatctttcatcattagtctcaagtctcttgaatatctatctctctttgataccaactttgatggaattttctc |
4913804 |
T |
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| Q |
212 |
attcagttctttgactaatcattctaaacttga |
244 |
Q |
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||| |||||||||| |||||||||||||||||| |
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| T |
4913803 |
atttagttctttgaataatcattctaaacttga |
4913771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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