View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0365_2D_low_15 (Length: 239)
Name: NF0365_2D_low_15
Description: NF0365_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365_2D_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 22923140 - 22923367
Alignment:
| Q |
1 |
ttttagatttaaaaatttgaataggatgcgcaaaaacctcattggatgagaaaagtaatgactttttt--atatcctctgtttacataaaccaattgtat |
98 |
Q |
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| T |
22923140 |
ttttagatttaagaatttgaatagggtgcgcaaaaacc-------atggaaaaaataatggcttttttttatatcctctatttatataaacaaattgtat |
22923232 |
T |
|
| Q |
99 |
gttaggttgtacttattgtgtgggaagaataagttaaaaatcatatgttatttacaaaagaaggggttgaacactttataagtgagatgattcataaatt |
198 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |
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| T |
22923233 |
gttaggttgtacttattgtgtggggacaataagttaaaaatcat--gttatttacaaaagaaagggttgaacacgttataagtgagatgatttataaatt |
22923330 |
T |
|
| Q |
199 |
taatgtcttaatattttacattaaagtgtgatgtcca |
235 |
Q |
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| T |
22923331 |
taatgtcttaatattttacattaaagtgtaatgtcca |
22923367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7439126 - 7439186
Alignment:
| Q |
1 |
ttttagatttaaaaatttgaataggatgcgcaaaaacctcattggatgagaaaagtaatga |
61 |
Q |
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|||||||||| | ||||||||||||| |||| | || ||||| |||||||||||||||||| |
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| T |
7439126 |
ttttagattttagaatttgaataggacgcgcgagaatctcataggatgagaaaagtaatga |
7439186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 34332528 - 34332575
Alignment:
| Q |
168 |
aacactttataagtgagatgattcataaatttaatgtcttaatatttt |
215 |
Q |
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| T |
34332528 |
aacactttataagtgacatgacttataaatttaatgtcttaagatttt |
34332575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 2336667 - 2336719
Alignment:
| Q |
163 |
ggttgaacactttataagtgagatgattcataaatttaatgtcttaatatttt |
215 |
Q |
| |
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||||||||||||||||||||||| || |||||||| |||| ||||| ||||| |
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| T |
2336667 |
ggttgaacactttataagtgagaggacccataaattcaatgccttaagatttt |
2336719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 6071175 - 6071208
Alignment:
| Q |
163 |
ggttgaacactttataagtgagatgattcataaa |
196 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
6071175 |
ggttgaacactttataagtgagatgatccataaa |
6071208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 31866479 - 31866427
Alignment:
| Q |
163 |
ggttgaacactttataagtgagatgattcataaatttaatgtcttaatatttt |
215 |
Q |
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||||||||| | ||||||||| | |||| |||||||||||||||||| ||||| |
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| T |
31866479 |
ggttgaacattgtataagtgaaaagatttataaatttaatgtcttaagatttt |
31866427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 32930731 - 32930775
Alignment:
| Q |
164 |
gttgaacactttataagtgagatgattcataaatttaatgtctta |
208 |
Q |
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|||||||| |||||||||||||||| ||||||| | ||||||||| |
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| T |
32930731 |
gttgaacattttataagtgagatgactcataaactcaatgtctta |
32930775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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