View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0365_2D_low_18 (Length: 229)

Name: NF0365_2D_low_18
Description: NF0365_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0365_2D_low_18
NF0365_2D_low_18
[»] chr7 (1 HSPs)
chr7 (12-212)||(45341146-45341344)
[»] chr3 (4 HSPs)
chr3 (13-141)||(14258889-14259023)
chr3 (18-114)||(16022869-16022971)
chr3 (148-210)||(19800545-19800606)
chr3 (148-207)||(16019077-16019136)
[»] chr4 (3 HSPs)
chr4 (11-146)||(16673668-16673810)
chr4 (56-141)||(41806043-41806127)
chr4 (148-197)||(16673548-16673597)
[»] chr8 (4 HSPs)
chr8 (13-137)||(15061753-15061884)
chr8 (148-207)||(24820102-24820160)
chr8 (146-207)||(15061971-15062032)
chr8 (150-207)||(16723492-16723549)
[»] chr6 (2 HSPs)
chr6 (56-141)||(15483019-15483104)
chr6 (11-139)||(23846374-23846508)
[»] scaffold0100 (1 HSPs)
scaffold0100 (13-141)||(37884-38019)
[»] chr2 (2 HSPs)
chr2 (11-141)||(16592441-16592577)
chr2 (146-200)||(16592297-16592351)
[»] scaffold0338 (1 HSPs)
scaffold0338 (14-135)||(18789-18916)
[»] chr1 (1 HSPs)
chr1 (40-115)||(11843309-11843384)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 45341146 - 45341344
Alignment:
Q  12 catcataaatatctctgcaacatataacaaatatcaaaaaccatgtctcataatacatcacgaacaatatctcaaatctcatacataaataaacaacaag 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||     
T  45341146 catcataaatatctcagcaacatataacaaatatcaaaaaccatgtctcataatacatcacggacaatatctaaaatctcatacataaataaaaaacaat 45341245  T
Q  112 tctcggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaa 211  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  45341246 tc--ggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaacttgcacgtcgtctacaccatttataaaaatggcgaa 45341343  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 14258889 - 14259023
Alignment:
Q  13 atcataaatatctctgcaacatataacaaatatcaaaaaccatgtct-------cataatacatcacgaacaatatctcaaatctcatacataaataaac 105  Q
    ||||| |||||||||||||||| |||||||| |||| ||||||||||       ||||||||||||| || ||||||||||||||||||||| |||| ||    
T  14258889 atcatgaatatctctgcaacatgtaacaaatctcaacaaccatgtctcaggtctcataatacatcaccaaaaatatctcaaatctcatacat-aatagac 14258987  T
Q  106 aacaagtctcggcaataatataaatacatagcataa 141  Q
    ||||||||||  |||||||||||||||||| |||||    
T  14258988 aacaagtctcatcaataatataaatacataacataa 14259023  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 16022971 - 16022869
Alignment:
Q  18 aaatatctctgcaacatataacaaatatcaaaaaccatgtct-------cataatacatcacgaacaatatctcaaatctcatacataaataaacaacaa 110  Q
    ||||||||| |||||||||||||||| |||| ||||||||||       ||||||||| ||| ||||||||||||||||| | |||| |||| |||||||    
T  16022971 aaatatctcagcaacatataacaaatctcaacaaccatgtcttaggtctcataatacaacaccaacaatatctcaaatcttaaacat-aatagacaacaa 16022873  T
Q  111 gtct 114  Q
    ||||    
T  16022872 gtct 16022869  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 19800545 - 19800606
Alignment:
Q  148 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcga 210  Q
    |||||| ||||||||| | |||||||||||||||||| | ||||||| |||||||||||||||    
T  19800545 agcacttacaagcaatgcaaactcaaacctgcacgtcgtgtacacca-ttataaaaatggcga 19800606  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 16019136 - 16019077
Alignment:
Q  148 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatgg 207  Q
    ||||||||||| ||| | |||||||||| |||||||| || |||||||||||| ||||||    
T  16019136 agcactcacaaacaacaagaactcaaacatgcacgtcgtccacaccatttatacaaatgg 16019077  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 16673810 - 16673668
Alignment:
Q  11 acatcataaatatctctgcaacatataacaaatatcaaaaaccatgtctca-------taatacatcacgaacaatatctcaaatctcatacataaataa 103  Q
    ||||||||||||||||  |  |||||||| ||| |||||||||||||||||       ||||||||||| ||||||||||||||||| | ||||||||||    
T  16673810 acatcataaatatctcaaccgcatataacgaatctcaaaaaccatgtctcaggtctcataatacatcaccaacaatatctcaaatcttagacataaataa 16673711  T
Q  104 acaacaagtctcggcaataatataaatacatagcataagtccc 146  Q
    ||||||||| |  ||||||| ||||||||| | ||||||||||    
T  16673710 acaacaagttttagcaataacataaatacacaacataagtccc 16673668  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 41806043 - 41806127
Alignment:
Q  56 gtctcataatacatcacgaacaatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 141  Q
    ||||||||||||| ||| || |||||||||||||||| |||| |||| | |||||||||||||| |||||||||| ||||||||||    
T  41806043 gtctcataatacaacaccaataatatctcaaatctcagacat-aatagataacaagtctcggcagtaatataaatgcatagcataa 41806127  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 16673597 - 16673548
Alignment:
Q  148 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccattt 197  Q
    |||||||||||| |||||||||||||||||||| ||  ||||||||||||    
T  16673597 agcactcacaagtaatacgaactcaaacctgcatgttgtctacaccattt 16673548  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 15061753 - 15061884
Alignment:
Q  13 atcataaatatctctgcaacatataacaaatatcaaaaaccatgt-------ctcataatacatcacgaacaatatctcaaatctcatacataaataaac 105  Q
    |||| ||||||||| |||||||||||||||| |||| ||||||||       ||||||||||||||  ||||||||||||||| ||| ||||||||| ||    
T  15061753 atcaaaaatatctcagcaacatataacaaatctcaacaaccatgtatcaggtctcataatacatcattaacaatatctcaaatttcagacataaatagac 15061852  T
Q  106 aacaagtctcggcaataatataaatacatagc 137  Q
    | ||||||||  |||||| |||||||||||||    
T  15061853 agcaagtctcatcaataaaataaatacatagc 15061884  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 24820160 - 24820102
Alignment:
Q  148 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatgg 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  24820160 agcactcacaagcaatacga-ctcaaacctgcacgtcatctacaccatttatacaaatgg 24820102  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 15061971 - 15062032
Alignment:
Q  146 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatgg 207  Q
    ||||||||||||||||||| |||||||| | |||||||| ||||||||||| ||| ||||||    
T  15061971 caagcactcacaagcaataggaactcaatcatgcacgtcgtctacaccattcatacaaatgg 15062032  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 16723492 - 16723549
Alignment:
Q  150 cactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatgg 207  Q
    ||||||||||||||||| ||||||  ||||||||  ||||||||||| ||| ||||||    
T  16723492 cactcacaagcaatacggactcaagtctgcacgttgtctacaccattcatacaaatgg 16723549  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 15483104 - 15483019
Alignment:
Q  56 gtctcataatacatcacgaacaatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 141  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| || |||| ||||||| |||  || ||||||||||| |||||    
T  15483104 gtctcataatacatcaccaacaatatctcaaatctcaaacataactagacaataagtctcagcagcaacataaatacataacataa 15483019  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 23846508 - 23846374
Alignment:
Q  11 acatcataaatatctctgcaacatataacaaatatcaaaaaccat-------gtctcataatacatcacgaacaatatctcaaatctcatacataaataa 103  Q
    ||||||||||||| ||  ||||||||||||||| |||| ||||||       ||||||||||| ||||| ||||||||||| || |||| |||||| |||    
T  23846508 acatcataaatatttcaacaacatataacaaatctcaacaaccatatcttaggtctcataatatatcaccaacaatatctccaacctcagacataattaa 23846409  T
Q  104 acaacaagtctcggcaataatataaatacatagcat 139  Q
    || |||||||||  ||||||||||||| ||||||||    
T  23846408 ac-acaagtctcaacaataatataaatgcatagcat 23846374  T

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Target: scaffold0100 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 37884 - 38019
Alignment:
Q  13 atcataaatatctctgcaacatataacaaatatcaaaaaccatgtctcat-------aatacatcacgaacaatatctcaaatctcatacataaataaac 105  Q
    |||| ||||||||| ||||| ||||| |||| |||| |||||||||||||       |||||||||| ||||||||||||||||||| |||||| || ||    
T  37884 atcaaaaatatctcagcaacctataataaatctcaacaaccatgtctcatgtttcataatacatcaccaacaatatctcaaatctcaaacataagtagac 37983  T
Q  106 aacaagtctcggcaataatataaatacatagcataa 141  Q
     |||||||||  ||||||   ||||||||| |||||    
T  37984 gacaagtctcatcaataaagcaaatacataacataa 38019  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 16592577 - 16592441
Alignment:
Q  11 acatcataaatatctctgcaacatataacaaatatcaaaaaccatgtctc-------ataatacatcacgaacaatatctc-aaatctcatacataaata 102  Q
    |||||||||||||||| ||||||||| |||||| |||| |||||||||||       |||||||||||| ||| | ||||| |||||||| ||||||       
T  16592577 acatcataaatatctcagcaacatatgacaaatctcaacaaccatgtctcagatcttataatacatcaccaacgacatctcaaaatctcagacataa--t 16592480  T
Q  103 aacaacaagtctcggcaataatataaatacatagcataa 141  Q
    | ||||||||||| |||||||| |||||||||| |||||    
T  16592479 agcaacaagtctcagcaataatgtaaatacataacataa 16592441  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 16592351 - 16592297
Alignment:
Q  146 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttata 200  Q
    ||||||||||| ||||||| |||||||| |||||||| | ||| |||||||||||    
T  16592351 caagcactcactagcaataagaactcaatcctgcacgccgtctccaccatttata 16592297  T

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Target: scaffold0338 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 18916 - 18789
Alignment:
Q  14 tcataaatatctctgcaacatataacaaatatcaaaaaccat-------gtctcataatacatcacgaacaatatctcaaatctcatacataaataaaca 106  Q
    ||||||||||||| |||||||| ||||||| |||| ||||||       ||||||||||||||||| || ||| ||| |||| | | |||  |||| |||    
T  18916 tcataaatatctcagcaacataaaacaaatctcaacaaccatgtctaaggtctcataatacatcaccaaaaatgtcttaaatatgagaca-caatagaca 18818  T
Q  107 acaagtctcggcaataatataaatacata 135  Q
    |||||||||||||||||| | ||||||||    
T  18817 acaagtctcggcaataatgtcaatacata 18789  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 11843309 - 11843384
Alignment:
Q  40 aaatatcaaaaaccatgtctcataatacatcacgaacaatatctcaaatctcatacataaataaacaacaagtctc 115  Q
    |||| |||| |||||||| |||||||||||||| ||  | |||||||||||||| ||||| | | |||||||||||    
T  11843309 aaatctcaacaaccatgtgtcataatacatcactaaataaatctcaaatctcatgcataagtgagcaacaagtctc 11843384  T

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